Gmisc: Descriptive Statistics, Transition Plots, and More

Tools for making the descriptive "Table 1" used in medical articles, a transition plot for showing changes between categories, a method for variable selection based on the SVD, Bézier lines with arrows complementing the ones in the 'grid' package, and more.

AuthorMax Gordon <max@gforge.se>
Date of publication2016-12-27 15:28:19
MaintainerMax Gordon <max@gforge.se>
LicenseGPL (>= 3)
Version1.4.1
http://gforge.se

View on CRAN

Man pages

assert: Checks if unit or number 0-1

bezierArrowGradient: A bezier arrow with gradient

bezierArrowSmpl: A simple bezier arrow

box: Create a box with text

boxPropGrob: Create a box with a color split

calculateLinesAndArrow: Gets offsetted lines

connect: Connect boxes with an arrow

convertShowMissing: A function for converting a show_missing variable.

copyAllNewAttributes: A simple thing to keep the attributes

descGetMissing: Get missingness statistics

describeFactors: Describes factor variables

describeMean: Describe the mean

describeMedian: A function that returns a description median that contains...

describeProp: A function that returns a description proportion that...

docx_document: Formatter wrapper for 'html_document', facilitates easier...

fastDoCall: An alternative to the internal 'do.call'

figCapNo: Adds a figure caption number

figCapNoLast: Gets the last figure caption number

figCapNoNext: Gets the next figure caption number

getAbsoluteWidth: Translates "npc" widths into absolute units

getBezierAdj4Arrw: Gets the bezier points adjusted for an arrow

getDescriptionStatsBy: Creating of description statistics

getGridVal: Gets grid value

getPval: P-value extractors for 'getDescriptionStatsBy'

getSvdMostInfluential: Gets the maximum contributor variables from svd()

getVectorAngle: Gets an angle

Gmisc-deprecated: Deprecated function(s) in 'Gmisc'

Gmisc-package: Collection of functions for plotting relations, generating...

gnrlBezierPoints: Generates a generalized Bezier line

htmlTable_latex: A wrapper around the 'htmlTable'/'latex' function

insertRowAndKeepAttr: Insert a row into a matrix

isHorizontal: Just a simple help with interpreting the radians

mergeDesc: Prepares a matrix for htmlTable from a list

mergeLists: Merging of multiple lists

mergeLists_internal: A helper function for mergeLists that does the actual work.

prCaptionFix: Fixes the caption for elements without caption

prDescGetAndValidateDefaultRef: A helper function for the description stats

prFtpHeaderStyle: Helper to ftp_document

prFtpOtherChanges: Changes lines for XML-conformity

prFtpOtherRemoval: Removes other unwanted lines

prFtpScriptRemoval: Removes the <script>*</scrip>

prGetStatistics: Get statistics according to the type

prGetTextGrobCex: Just a simple acces to the gp$cex parameter

prGridPlotTitle: Adds a title to the plot

prPasteVec: Collapses a vector for throwing errors

prPushMarginViewport: Pushes viewport with margins

prSetMaxWidth: Updates the css max-width

prTcMatchClr: Finds the matching colors for the new addition based on the...

prTcPlotArrows: Plots the arrows within a single transition set

prTcPlotBoxColumn: Plots a column of boxes

prTcValidateAndPrepClr: Checks and prepares colors

prTpGetBoxPositions: Gets the box position

prTpGetBoxPropClr: Gets the color for the given box

prTpGetBoxSizedTextGrob: Gets the text size for the box

prTpGetColors: Gets a set of colors or just one color

prTpPlotArrows: Plots the arrows

prTpPlotBox: Plots the box for the transition plot

prTpPlotBoxes: Plot boxes and arrows

Transition-class: A reference class for generating transition plots

transitionPlot: A transition plot

validateAndConvertVectorInputs: Checks the input of a vector

Functions

assert_just Man page
assert_label Man page
assert_unit Man page
bezierArrowGradient Man page
bezierArrowSmpl Man page
boxGrob Man page
boxPropGrob Man page
calculateLinesAndArrow Man page
connectGrob Man page
convertShowMissing Man page
copyAllNewAttributes Man page
descGetMissing Man page
describeFactors Man page
describeMean Man page
describeMedian Man page
describeProp Man page
docx_document Man page
fastDoCall Man page
figCapNo Man page
figCapNoLast Man page
figCapNoNext Man page
forestplot2 Man page
getAbsoluteWidth Man page
getBezierAdj4Arrw Man page
getDescriptionStatsBy Man page
getGridVal Man page
getPvalAnova Man page
getPvalChiSq Man page
getPvalFisher Man page
getPvalKruskal Man page
getPvalWilcox Man page
getSvdMostInfluential Man page
getVectorAngle Man page
Gmisc-deprecated Man page
Gmisc-deprecated-package Man page
Gmisc-package Man page
gnrlBezierPoints Man page
heightDetails.box Man page
htmlTable.descMrg Man page
insertRowAndKeepAttr Man page
isHorizontal Man page
knit_print.descMrg Man page
latex.descMrg Man page
mergeDesc Man page
mergeLists Man page
mergeLists_internal Man page
plot.box Man page
plot.connect_boxes Man page
prCaptionFix Man page
prDescGetAndValidateDefaultRef Man page
prFtpHeaderStyle Man page
prFtpOtherChanges Man page
prFtpOtherRemoval Man page
prFtpScriptRemoval Man page
prGetStatistics Man page
prGetTextGrobCex Man page
prGridPlotTitle Man page
print.box Man page
print.connect_boxes Man page
print.descMrg Man page
prPasteVec Man page
prPushMarginViewport Man page
prSetMaxWidth Man page
prTcMatchClr Man page
prTcPlotArrows Man page
prTcPlotBoxColumn Man page
prTcValidateAndPrepClr Man page
prTpGetBoxPositions Man page
prTpGetBoxPropClr Man page
prTpGetBoxSizedTextGrob Man page
prTpGetColors Man page
prTpPlotArrows Man page
prTpPlotBox Man page
prTpPlotBoxes Man page
Transition Man page
Transition-class Man page
transitionPlot Man page
validateAndConvertVectorInputs Man page
widthDetails.box Man page

Files

Gmisc
Gmisc/inst
Gmisc/inst/examples
Gmisc/inst/examples/data-SCB_example.R
Gmisc/inst/examples/mergeLists_example.R
Gmisc/inst/examples/getDescriptionStatsBy_example.R
Gmisc/inst/examples/getSvdMostInfluential_example.R
Gmisc/inst/examples/transitionClass_example.R
Gmisc/inst/examples/fastDoCall_ex.R
Gmisc/inst/examples/bezierArrowGradient_example.R
Gmisc/inst/examples/bezierArrowSmpl_example.R
Gmisc/inst/examples/connectGrob_example.R
Gmisc/inst/extdata
Gmisc/inst/extdata/Full_test_suite.Rmd
Gmisc/inst/doc
Gmisc/inst/doc/Descriptives.Rmd
Gmisc/inst/doc/Descriptives.html
Gmisc/inst/doc/Transition-class.html
Gmisc/inst/doc/Descriptives.R
Gmisc/inst/doc/transitionPlot.R
Gmisc/inst/doc/Transition-class.R
Gmisc/inst/doc/Grid-based_flowcharts.html
Gmisc/inst/doc/Transition-class.Rmd
Gmisc/inst/doc/Grid-based_flowcharts.Rmd
Gmisc/inst/doc/transitionPlot.Rmd
Gmisc/inst/doc/transitionPlot.html
Gmisc/inst/doc/Grid-based_flowcharts.R
Gmisc/inst/rmarkdown
Gmisc/inst/rmarkdown/docx.css
Gmisc/inst/rmarkdown/templates
Gmisc/inst/rmarkdown/templates/CONSORT_v2010_docx
Gmisc/inst/rmarkdown/templates/CONSORT_v2010_docx/template.yaml
Gmisc/inst/rmarkdown/templates/CONSORT_v2010_docx/skeleton
Gmisc/inst/rmarkdown/templates/CONSORT_v2010_docx/skeleton/skeleton.Rmd
Gmisc/inst/rmarkdown/templates/STROBE_v4_docx
Gmisc/inst/rmarkdown/templates/STROBE_v4_docx/template.yaml
Gmisc/inst/rmarkdown/templates/STROBE_v4_docx/skeleton
Gmisc/inst/rmarkdown/templates/STROBE_v4_docx/skeleton/skeleton.Rmd
Gmisc/inst/include
Gmisc/inst/include/Gmisc.h
Gmisc/tests
Gmisc/tests/visual_tests
Gmisc/tests/visual_tests/Full_test_suite.Rmd
Gmisc/tests/visual_tests/Max_width_test.Rmd
Gmisc/tests/visual_tests/FTP_test
Gmisc/tests/visual_tests/FTP_test/FTP_test.Rmd
Gmisc/tests/visual_tests/FTP_test/Setup_and_munge.R
Gmisc/tests/visual_tests/MathJax_test.Rmd
Gmisc/tests/visual_tests/Highlighting_test.Rmd
Gmisc/tests/visual_tests/bezierArrowRcpp_vtests.R
Gmisc/tests/visual_tests/tansitionPlot_vtests.R
Gmisc/tests/visual_tests/bezierArrowGradient_vtests.R
Gmisc/tests/visual_tests/bezierArrowSmpl_vtests.R
Gmisc/tests/visual_tests/test-bezier-adjustment.R
Gmisc/tests/visual_tests/transitionClass_vtest.R
Gmisc/tests/performance
Gmisc/tests/performance/bezierArrowProfiler.R
Gmisc/tests/cpp_tests
Gmisc/tests/cpp_tests/visual_line_debugging.R
Gmisc/tests/testthat.R
Gmisc/tests/testthat
Gmisc/tests/testthat/Rplots.pdf
Gmisc/tests/testthat/test-getDescriptionStats.R
Gmisc/tests/testthat/test-insertRowAndKeepAttr.R
Gmisc/tests/testthat/test-boxGrobs.R
Gmisc/tests/testthat/test-mergeLists.R
Gmisc/tests/testthat/test-figCapNo.R
Gmisc/tests/testthat/test-descriptionStats.R
Gmisc/tests/testthat/test-bezier.R
Gmisc/tests/testthat/test-copyAllAttributes.R
Gmisc/tests/testthat/test-docx_document.R
Gmisc/tests/testthat/test-fastDoCall.R
Gmisc/tests/testthat/test-fig_caption.R
Gmisc/tests/testthat/test-transitionClass.R
Gmisc/src
Gmisc/src/Makevars
Gmisc/src/gnrlBezier.cpp
Gmisc/src/bezierArrowFn.cpp
Gmisc/src/Gmisc_lines.cpp
Gmisc/src/Makevars.win
Gmisc/src/RcppExports.cpp
Gmisc/NAMESPACE
Gmisc/NEWS
Gmisc/R
Gmisc/R/bezierArrowGradient.R Gmisc/R/boxGrobs.R Gmisc/R/transitionClass_helpers.R Gmisc/R/insertRowAndKeepAttr.R Gmisc/R/docx_document.R Gmisc/R/fastDoCall.R Gmisc/R/assert.R Gmisc/R/mergeDesc.R Gmisc/R/getDescriptionStatsBy.R Gmisc/R/descGetMissing.R Gmisc/R/Gmisc.R Gmisc/R/mergeLists.R Gmisc/R/getSvdMostInfluential.R Gmisc/R/transitionPlot_helpers.R Gmisc/R/getPval.R Gmisc/R/descriptionStats.R Gmisc/R/RcppExports.R Gmisc/R/deprecated.R Gmisc/R/private_functions.R Gmisc/R/bezier_private_functions.R Gmisc/R/transitionPlot.R Gmisc/R/figCaptionNo.R Gmisc/R/copyAllNewAttributes.R Gmisc/R/convertShowMissing.R Gmisc/R/bezierArrowSmpl.R Gmisc/R/transitionClass.R
Gmisc/vignettes
Gmisc/vignettes/Descriptives.Rmd
Gmisc/vignettes/custom.css
Gmisc/vignettes/Transition-class.Rmd
Gmisc/vignettes/Grid-based_flowcharts.Rmd
Gmisc/vignettes/transitionPlot.Rmd
Gmisc/MD5
Gmisc/build
Gmisc/build/vignette.rds
Gmisc/DESCRIPTION
Gmisc/man
Gmisc/man/prFtpOtherChanges.Rd Gmisc/man/prTpPlotBoxes.Rd Gmisc/man/describeMedian.Rd Gmisc/man/connect.Rd Gmisc/man/prDescGetAndValidateDefaultRef.Rd Gmisc/man/prPasteVec.Rd Gmisc/man/prTcValidateAndPrepClr.Rd Gmisc/man/docx_document.Rd Gmisc/man/assert.Rd Gmisc/man/gnrlBezierPoints.Rd Gmisc/man/htmlTable_latex.Rd Gmisc/man/boxPropGrob.Rd Gmisc/man/mergeLists.Rd Gmisc/man/mergeDesc.Rd Gmisc/man/figCapNoLast.Rd Gmisc/man/prGridPlotTitle.Rd Gmisc/man/calculateLinesAndArrow.Rd Gmisc/man/prTcPlotBoxColumn.Rd Gmisc/man/figCapNo.Rd Gmisc/man/isHorizontal.Rd Gmisc/man/prTpGetBoxPropClr.Rd Gmisc/man/prTcMatchClr.Rd Gmisc/man/Gmisc-deprecated.Rd Gmisc/man/Transition-class.Rd Gmisc/man/validateAndConvertVectorInputs.Rd Gmisc/man/describeFactors.Rd Gmisc/man/prSetMaxWidth.Rd Gmisc/man/prPushMarginViewport.Rd Gmisc/man/prGetStatistics.Rd Gmisc/man/transitionPlot.Rd Gmisc/man/prTpPlotBox.Rd Gmisc/man/bezierArrowGradient.Rd Gmisc/man/prTpGetColors.Rd Gmisc/man/copyAllNewAttributes.Rd Gmisc/man/Gmisc-package.Rd Gmisc/man/getVectorAngle.Rd Gmisc/man/prTcPlotArrows.Rd Gmisc/man/prCaptionFix.Rd Gmisc/man/fastDoCall.Rd Gmisc/man/insertRowAndKeepAttr.Rd Gmisc/man/figCapNoNext.Rd Gmisc/man/getSvdMostInfluential.Rd Gmisc/man/getDescriptionStatsBy.Rd Gmisc/man/prTpGetBoxSizedTextGrob.Rd Gmisc/man/describeProp.Rd Gmisc/man/prTpPlotArrows.Rd Gmisc/man/descGetMissing.Rd Gmisc/man/box.Rd Gmisc/man/prFtpOtherRemoval.Rd Gmisc/man/prGetTextGrobCex.Rd Gmisc/man/prFtpHeaderStyle.Rd Gmisc/man/convertShowMissing.Rd Gmisc/man/getAbsoluteWidth.Rd Gmisc/man/describeMean.Rd Gmisc/man/getPval.Rd Gmisc/man/getGridVal.Rd Gmisc/man/prTpGetBoxPositions.Rd Gmisc/man/bezierArrowSmpl.Rd Gmisc/man/prFtpScriptRemoval.Rd Gmisc/man/getBezierAdj4Arrw.Rd Gmisc/man/mergeLists_internal.Rd

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