Gmisc: Descriptive Statistics, Transition Plots, and More
Version 1.4.1

Tools for making the descriptive "Table 1" used in medical articles, a transition plot for showing changes between categories, a method for variable selection based on the SVD, Bézier lines with arrows complementing the ones in the 'grid' package, and more.

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AuthorMax Gordon <max@gforge.se>
Date of publication2016-12-27 15:28:19
MaintainerMax Gordon <max@gforge.se>
LicenseGPL (>= 3)
Version1.4.1
URL http://gforge.se
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("Gmisc")

Man pages

assert: Checks if unit or number 0-1
bezierArrowGradient: A bezier arrow with gradient
bezierArrowSmpl: A simple bezier arrow
box: Create a box with text
boxPropGrob: Create a box with a color split
calculateLinesAndArrow: Gets offsetted lines
connect: Connect boxes with an arrow
convertShowMissing: A function for converting a show_missing variable.
copyAllNewAttributes: A simple thing to keep the attributes
descGetMissing: Get missingness statistics
describeFactors: Describes factor variables
describeMean: Describe the mean
describeMedian: A function that returns a description median that contains...
describeProp: A function that returns a description proportion that...
docx_document: Formatter wrapper for 'html_document', facilitates easier...
fastDoCall: An alternative to the internal 'do.call'
figCapNo: Adds a figure caption number
figCapNoLast: Gets the last figure caption number
figCapNoNext: Gets the next figure caption number
getAbsoluteWidth: Translates "npc" widths into absolute units
getBezierAdj4Arrw: Gets the bezier points adjusted for an arrow
getDescriptionStatsBy: Creating of description statistics
getGridVal: Gets grid value
getPval: P-value extractors for 'getDescriptionStatsBy'
getSvdMostInfluential: Gets the maximum contributor variables from svd()
getVectorAngle: Gets an angle
Gmisc-deprecated: Deprecated function(s) in 'Gmisc'
Gmisc-package: Collection of functions for plotting relations, generating...
gnrlBezierPoints: Generates a generalized Bezier line
htmlTable_latex: A wrapper around the 'htmlTable'/'latex' function
insertRowAndKeepAttr: Insert a row into a matrix
isHorizontal: Just a simple help with interpreting the radians
mergeDesc: Prepares a matrix for htmlTable from a list
mergeLists: Merging of multiple lists
mergeLists_internal: A helper function for mergeLists that does the actual work.
prCaptionFix: Fixes the caption for elements without caption
prDescGetAndValidateDefaultRef: A helper function for the description stats
prFtpHeaderStyle: Helper to ftp_document
prFtpOtherChanges: Changes lines for XML-conformity
prFtpOtherRemoval: Removes other unwanted lines
prFtpScriptRemoval: Removes the <script>*</scrip>
prGetStatistics: Get statistics according to the type
prGetTextGrobCex: Just a simple acces to the gp$cex parameter
prGridPlotTitle: Adds a title to the plot
prPasteVec: Collapses a vector for throwing errors
prPushMarginViewport: Pushes viewport with margins
prSetMaxWidth: Updates the css max-width
prTcMatchClr: Finds the matching colors for the new addition based on the...
prTcPlotArrows: Plots the arrows within a single transition set
prTcPlotBoxColumn: Plots a column of boxes
prTcValidateAndPrepClr: Checks and prepares colors
prTpGetBoxPositions: Gets the box position
prTpGetBoxPropClr: Gets the color for the given box
prTpGetBoxSizedTextGrob: Gets the text size for the box
prTpGetColors: Gets a set of colors or just one color
prTpPlotArrows: Plots the arrows
prTpPlotBox: Plots the box for the transition plot
prTpPlotBoxes: Plot boxes and arrows
Transition-class: A reference class for generating transition plots
transitionPlot: A transition plot
validateAndConvertVectorInputs: Checks the input of a vector

Functions

Gmisc-deprecated Man page
Gmisc-deprecated-package Man page
Gmisc-package Man page
Transition Man page
Transition-class Man page
align2Axis Source code
assert_just Man page Source code Source code
assert_label Man page Source code
assert_unit Man page Source code
bezierArrowGradient Man page Source code
bezierArrowSmpl Man page Source code
boxGrob Man page Source code
boxPropGrob Man page Source code
calculateLinesAndArrow Man page Source code
connectGrob Man page Source code
convertShowMissing Man page Source code
copyAllNewAttributes Man page Source code
dep_var Source code
descGetMissing Man page Source code
describeFactors Man page Source code
describeMean Man page Source code
describeMedian Man page Source code
describeProp Man page Source code
docx_document Man page Source code
extendLine Source code
fastDoCall Man page Source code
figCapNo Man page Source code
figCapNoLast Man page Source code
figCapNoNext Man page Source code
forestplot2 Man page Source code
getAbsoluteWidth Man page Source code
getBezierAdj4Arrw Man page Source code
getDescriptionStatsBy Man page Source code
getGridVal Man page Source code
getPvalAnova Man page Source code
getPvalChiSq Man page Source code
getPvalFisher Man page Source code
getPvalKruskal Man page Source code
getPvalWilcox Man page Source code
getSvdMostInfluential Man page Source code
getVectorAngle Man page Source code
gnrlBezierPoints Man page Source code
heightDetails.box Man page Source code
htmlTable.descMrg Man page Source code
insertRowAndKeepAttr Man page Source code
isHorizontal Man page Source code
knit_print.descMrg Man page Source code
latex.descMrg Man page Source code
mergeDesc Man page Source code
mergeLists Man page Source code
mergeLists_internal Man page Source code
plot.box Man page
plot.connect_boxes Man page
prAdjustXPos Source code
prAdjustYPos Source code
prAsUnit Source code
prCaptionFix Man page Source code
prCnvrtX Source code
prCnvrtY Source code
prConvTxt2Height Source code
prDescGetAndValidateDefaultRef Man page Source code
prFtpHeaderStyle Man page Source code
prFtpOtherChanges Man page Source code
prFtpOtherRemoval Man page Source code
prFtpScriptRemoval Man page Source code
prGetStatistics Man page Source code
prGetTextGrobCex Man page Source code
prGetX4Txt Source code
prGridPlotTitle Man page Source code
prPasteVec Man page Source code
prPushMarginViewport Man page Source code
prSetMaxWidth Man page Source code
prTcMatchClr Man page Source code
prTcPlotArrows Man page Source code
prTcPlotBoxColumn Man page Source code
prTcValidateAndPrepClr Man page Source code
prTpGetBoxPositions Man page Source code
prTpGetBoxPropClr Man page Source code
prTpGetBoxSizedTextGrob Man page Source code
prTpGetColors Man page Source code
prTpPlotArrows Man page Source code
prTpPlotBox Man page Source code
prTpPlotBoxes Man page Source code
print.box Man page Source code
print.connect_boxes Man page Source code
print.descMrg Man page Source code
shortenLine Source code
transitionPlot Man page Source code
validateAndConvertVectorInputs Man page Source code
widthDetails.box Man page Source code

Files

inst
inst/examples
inst/examples/data-SCB_example.R
inst/examples/mergeLists_example.R
inst/examples/getDescriptionStatsBy_example.R
inst/examples/getSvdMostInfluential_example.R
inst/examples/transitionClass_example.R
inst/examples/fastDoCall_ex.R
inst/examples/bezierArrowGradient_example.R
inst/examples/bezierArrowSmpl_example.R
inst/examples/connectGrob_example.R
inst/extdata
inst/extdata/Full_test_suite.Rmd
inst/doc
inst/doc/Descriptives.Rmd
inst/doc/Descriptives.html
inst/doc/Transition-class.html
inst/doc/Descriptives.R
inst/doc/transitionPlot.R
inst/doc/Transition-class.R
inst/doc/Grid-based_flowcharts.html
inst/doc/Transition-class.Rmd
inst/doc/Grid-based_flowcharts.Rmd
inst/doc/transitionPlot.Rmd
inst/doc/transitionPlot.html
inst/doc/Grid-based_flowcharts.R
inst/rmarkdown
inst/rmarkdown/docx.css
inst/rmarkdown/templates
inst/rmarkdown/templates/CONSORT_v2010_docx
inst/rmarkdown/templates/CONSORT_v2010_docx/template.yaml
inst/rmarkdown/templates/CONSORT_v2010_docx/skeleton
inst/rmarkdown/templates/CONSORT_v2010_docx/skeleton/skeleton.Rmd
inst/rmarkdown/templates/STROBE_v4_docx
inst/rmarkdown/templates/STROBE_v4_docx/template.yaml
inst/rmarkdown/templates/STROBE_v4_docx/skeleton
inst/rmarkdown/templates/STROBE_v4_docx/skeleton/skeleton.Rmd
inst/include
inst/include/Gmisc.h
tests
tests/visual_tests
tests/visual_tests/Full_test_suite.Rmd
tests/visual_tests/Max_width_test.Rmd
tests/visual_tests/FTP_test
tests/visual_tests/FTP_test/FTP_test.Rmd
tests/visual_tests/FTP_test/Setup_and_munge.R
tests/visual_tests/MathJax_test.Rmd
tests/visual_tests/Highlighting_test.Rmd
tests/visual_tests/bezierArrowRcpp_vtests.R
tests/visual_tests/tansitionPlot_vtests.R
tests/visual_tests/bezierArrowGradient_vtests.R
tests/visual_tests/bezierArrowSmpl_vtests.R
tests/visual_tests/test-bezier-adjustment.R
tests/visual_tests/transitionClass_vtest.R
tests/performance
tests/performance/bezierArrowProfiler.R
tests/cpp_tests
tests/cpp_tests/visual_line_debugging.R
tests/testthat.R
tests/testthat
tests/testthat/Rplots.pdf
tests/testthat/test-getDescriptionStats.R
tests/testthat/test-insertRowAndKeepAttr.R
tests/testthat/test-boxGrobs.R
tests/testthat/test-mergeLists.R
tests/testthat/test-figCapNo.R
tests/testthat/test-descriptionStats.R
tests/testthat/test-bezier.R
tests/testthat/test-copyAllAttributes.R
tests/testthat/test-docx_document.R
tests/testthat/test-fastDoCall.R
tests/testthat/test-fig_caption.R
tests/testthat/test-transitionClass.R
src
src/Makevars
src/gnrlBezier.cpp
src/bezierArrowFn.cpp
src/Gmisc_lines.cpp
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
NEWS
R
R/bezierArrowGradient.R
R/boxGrobs.R
R/transitionClass_helpers.R
R/insertRowAndKeepAttr.R
R/docx_document.R
R/fastDoCall.R
R/assert.R
R/mergeDesc.R
R/getDescriptionStatsBy.R
R/descGetMissing.R
R/Gmisc.R
R/mergeLists.R
R/getSvdMostInfluential.R
R/transitionPlot_helpers.R
R/getPval.R
R/descriptionStats.R
R/RcppExports.R
R/deprecated.R
R/private_functions.R
R/bezier_private_functions.R
R/transitionPlot.R
R/figCaptionNo.R
R/copyAllNewAttributes.R
R/convertShowMissing.R
R/bezierArrowSmpl.R
R/transitionClass.R
vignettes
vignettes/Descriptives.Rmd
vignettes/custom.css
vignettes/Transition-class.Rmd
vignettes/Grid-based_flowcharts.Rmd
vignettes/transitionPlot.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/prFtpOtherChanges.Rd
man/prTpPlotBoxes.Rd
man/describeMedian.Rd
man/connect.Rd
man/prDescGetAndValidateDefaultRef.Rd
man/prPasteVec.Rd
man/prTcValidateAndPrepClr.Rd
man/docx_document.Rd
man/assert.Rd
man/gnrlBezierPoints.Rd
man/htmlTable_latex.Rd
man/boxPropGrob.Rd
man/mergeLists.Rd
man/mergeDesc.Rd
man/figCapNoLast.Rd
man/prGridPlotTitle.Rd
man/calculateLinesAndArrow.Rd
man/prTcPlotBoxColumn.Rd
man/figCapNo.Rd
man/isHorizontal.Rd
man/prTpGetBoxPropClr.Rd
man/prTcMatchClr.Rd
man/Gmisc-deprecated.Rd
man/Transition-class.Rd
man/validateAndConvertVectorInputs.Rd
man/describeFactors.Rd
man/prSetMaxWidth.Rd
man/prPushMarginViewport.Rd
man/prGetStatistics.Rd
man/transitionPlot.Rd
man/prTpPlotBox.Rd
man/bezierArrowGradient.Rd
man/prTpGetColors.Rd
man/copyAllNewAttributes.Rd
man/Gmisc-package.Rd
man/getVectorAngle.Rd
man/prTcPlotArrows.Rd
man/prCaptionFix.Rd
man/fastDoCall.Rd
man/insertRowAndKeepAttr.Rd
man/figCapNoNext.Rd
man/getSvdMostInfluential.Rd
man/getDescriptionStatsBy.Rd
man/prTpGetBoxSizedTextGrob.Rd
man/describeProp.Rd
man/prTpPlotArrows.Rd
man/descGetMissing.Rd
man/box.Rd
man/prFtpOtherRemoval.Rd
man/prGetTextGrobCex.Rd
man/prFtpHeaderStyle.Rd
man/convertShowMissing.Rd
man/getAbsoluteWidth.Rd
man/describeMean.Rd
man/getPval.Rd
man/getGridVal.Rd
man/prTpGetBoxPositions.Rd
man/bezierArrowSmpl.Rd
man/prFtpScriptRemoval.Rd
man/getBezierAdj4Arrw.Rd
man/mergeLists_internal.Rd
Gmisc documentation built on May 29, 2017, 6:58 p.m.