plot.ResScanOutput: Schema or map of the clusters

In HDSpatialScan: Multivariate and Functional Spatial Scan Statistics

Schema or map of the clusters

Description

This function plots a schema or a map of the sites and the clusters

Usage

## S3 method for class 'ResScanOutput'
plot(
  x,
  type,
  spobject = NULL,
  system_conv = NULL,
  colors = "red",
  only.MLC = FALSE,
  ...
)

Arguments

x	ResScanOutput. Output of a scan function (UG, UNP, MG, MNP, PFSS, DFFSS, URBFSS, NPFSS, MPFSS, MDFFSS or MRBFSS)
type	character. Type of plot: "schema", "map" (the clusters are represented by circles) or "map2" (the clusters are colored on the map)
spobject	SpObject. SpatialObject with the same coordinates system the one used for the scan. Only considered if type is "map" or "map2"
system_conv	character. System to convert the coordinates for the plot. Only considered if the system used in the scan was "WGS84" and if type is "schema". Else it will be ignored. Must be entered as in the PROJ.4 documentation
colors	character. Colors of the clusters. If length(colors)=1 all the clusters will be in this color. Else it should be a vector of length the number of clusters to plot.
only.MLC	logical. Should we plot only the MLC or all the significant clusters?
...	Further arguments to be passed to or from methods.

Value

No value returned, plots a schema or a map of the sites and the clusters.

Examples

library(sp)
data("map_sites")
data("funi_data")
coords <- coordinates(map_sites)

res_npfss <- SpatialScan(method = "NPFSS", data = funi_data, sites_coord = coords,
system = "WGS84", mini = 1, maxi = nrow(coords)/2)$NPFSS

plot(x = res_npfss, type = "schema", system_conv = "+init=epsg:2154")
plot(x = res_npfss, type = "map", spobject = map_sites)
plot(x = res_npfss, type = "map2", spobject = map_sites)

HDSpatialScan documentation built on May 31, 2023, 7:52 p.m.