plotSummary.ResScanOutputUniFunct: Plots the mean or median curves in the clusters detected by a...

In HDSpatialScan: Multivariate and Functional Spatial Scan Statistics

Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)

Description

This function plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS).

Usage

## S3 method for class 'ResScanOutputUniFunct'
plotSummary(x, type = "mean", colors = "red", only.MLC = FALSE, ...)

Arguments

x	ResScanOutputUniFunct. Output of a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).
type	character. "mean" or "median". If "mean": the mean curves in the clusters are plotted in solid lines, outside the cluster in dots, the global mean curve is in black. If "median": the median curves in the clusters are plotted in solid lines, outside the cluster in dots, the global median curve is in black.
colors	character. The colors to plot the clusters' summary curves. If length(colors)==1 then all the clusters will be plotted in this color. Else there must be the same number of elements in colors than the number of clusters
only.MLC	logical. Should we plot only the MLC or all the significant clusters?
...	Further arguments to be passed to or from methods.

Value

No value returned, plots the curves.

Examples

library(sp)
data("map_sites")
data("funi_data")
coords <- coordinates(map_sites)

res_npfss <- SpatialScan(method = "NPFSS", data = funi_data, sites_coord = coords,
system = "WGS84", mini = 1, maxi = nrow(coords)/2)$NPFSS

plotSummary(x = res_npfss, type = "median")

HDSpatialScan documentation built on May 31, 2023, 7:52 p.m.