Man pages for HMP
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
| Barchart.data | A Graphical Representation of Taxa Proportions |
| C.alpha.multinomial | C(alpha) - Optimal Test for Assessing Multinomial Goodness of... |
| Data.filter | A Data Filter |
| Dirichlet.multinomial | Generation of Dirichlet-Multinomial Random Samples |
| DM.MoM | Method-of-Moments (MoM) Estimators of the... |
| DM.Rpart | Dirichlet-Multinomial RPart |
| dmrp_covars | Paper Covariate Set |
| dmrp_data | Paper Taxa Data Set |
| Est.Pi | Estimate the Pi Vector |
| formatDataSets | Format Data |
| Gen.Alg | Find Taxa Separating Two Groups using Genetic Algorithm (GA) |
| Gen.Alg.Consensus | Find Taxa Separating Two Groups using Multiple Genetic... |
| HMP-internal | Internal Functions |
| HMP-package | Hypothesis Testing and Power Calculations for Comparing... |
| Kullback.Leibler | Kullback Leibler |
| MC.Xdc.statistics | Size and Power for the Several-Sample DM Parameter Test... |
| MC.Xmc.statistics | Size and Power of Several Sample RAD-Probability Mean Test... |
| MC.Xmcupo.statistics | Size and Power of Several Sample RAD-Probability Mean Test... |
| MC.Xoc.statistics | Size and Power of Several Sample-Overdispersion Test... |
| MC.Xsc.statistics | Size and Power for the One Sample RAD Probability-Mean Test... |
| MC.ZT.statistics | Size and Power of Goodness of Fit Test: Multinomial vs.... |
| Multinomial | Generation of Multinomial Random Samples |
| Plot.MDS | Multidimensional Scaling Plot of Microbiome Data |
| Plot.Pi | Plot the Pi Vector |
| Plot.RM.Barchart | Plot the Pi Vector for Repeated Measures |
| Plot.RM.Dotplot | Plot the Pi Vector for Repeated Measures |
| saliva | Saliva Data Set |
| Test.Paired | Test Paired Data Sets |
| throat | Throat Data Set |
| tongue | Tongue Data Set |
| tonsils | Palatine Tonsil Data Set |
| Xdc.sevsample | Likelihood-Ratio-Test Statistics: Several Sample... |
| Xmc.sevsample | Generalized Wald-type Statistics: Several Sample RAD... |
| Xmcupo.effectsize | Effect Size for Xmcupo Statistic |
| Xmcupo.sevsample | Generalized Wald-type Statistics: Several Sample RAD... |
| Xoc.sevsample | Likelihood-Ratio-Test Statistics: Several Sample... |
| Xsc.onesample | Generalized Wald-Type Statistics: One Sample RAD... |
