Jaccard: Jaccard

In HTGM2D: Two Dimensional High Throughput 'GoMiner'

Jaccard

Description

create the heat map data that is needed as input to JaccardHeatMap()

Usage

Jaccard(dir, m1, m2, thresh1 = 2, thresh2 = 3, B = 100)

Arguments

dir	character string full pathname to the directory acting as result repository
m1	return value of catGenes
m2	return value of catGenes
thresh1	integer acceptance threshold for the number of genes in a cat
thresh2	integer acceptance threshold for the number of common genes in 2 cats
B	integer a total bootstrap iteration

Value

returns a numerical matrix containing number of genes and associated p value in the intersection of 2 categories

Examples

#load("data/x_m1.RData")
#load("data/x_m2.RData")
mat<-Jaccard(dir=tempdir(),x_m1,x_m2)

HTGM2D documentation built on June 8, 2025, 9:38 p.m.