catGenes: catGenes
In HTGM2D: Two Dimensional High Throughput 'GoMiner'
catGenes R Documentation
catGenes
Description
match up genes in gene list with categories in GOGOA3 database
Usage
catGenes(geneList, GOGOA3, ontology)
Arguments
geneList
character vector of user-supplied genes of interest
GOGOA3
return value of subsetGOGOA()
ontology
c("molecular_function","cellular_component","biological_process")
Value
returns a matrix of 1's and 0's indicating the presence or absence of gene-category pairs
Examples
#load("data/GOGOA3small.RData")
geneList<-cluster52
m1<-catGenes(geneList,GOGOA3small,"biological_process")
HTGM2D documentation built on June 8, 2025, 9:38 p.m.
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| catGenes | R Documentation |
catGenes
Description
match up genes in gene list with categories in GOGOA3 database
Usage
catGenes(geneList, GOGOA3, ontology)
Arguments
geneList |
character vector of user-supplied genes of interest |
GOGOA3 |
return value of subsetGOGOA() |
ontology |
c("molecular_function","cellular_component","biological_process") |
Value
returns a matrix of 1's and 0's indicating the presence or absence of gene-category pairs
Examples
#load("data/GOGOA3small.RData")
geneList<-cluster52
m1<-catGenes(geneList,GOGOA3small,"biological_process")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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