compareGoMinerHTGM2D: compareGoMinerHTGM2D

In HTGM2D: Two Dimensional High Throughput 'GoMiner'

compareGoMinerHTGM2D

Description

compare the results of GoMiner and HTGM2D

Usage

compareGoMinerHTGM2D(subd, mat, l, ontologies)

Arguments

subd	character string full path name to the output subdirectory
mat	return value of Jaccard()
l	of return values of GoMiner()
ontologies	character vector of 2 ontologies e.g. c("biological_process","cellular_component")

Value

returns no value, but saves files that list category difference between GoMiner and HTG2D

Examples

ontologies<-c("biological_process","cellular_component")
#load("data/x_l.Rdata")
#load("data/x_mat.Rdata")
subd<-tempdir()
compareGoMinerHTGM2D(subd,x_mat,x_l,ontologies)

HTGM2D documentation built on June 8, 2025, 9:38 p.m.