HWEintrinsic: Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem

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General (multi-allelic) Hardy-Weinberg equilibrium problem from an objective Bayesian testing standpoint. This aim is achieved through the identification of a class of priors specifically designed for this testing problem. A class of intrinsic priors under the full model is considered. This class is indexed by a tuning quantity, the training sample size, as discussed in Consonni, Moreno and Venturini (2010). These priors are objective, satisfy Savage's continuity condition and have proved to behave extremely well for many statistical testing problems.

Author
Sergio Venturini
Date of publication
2015-07-08 00:29:41
Maintainer
Sergio Venturini <sergio.venturini@unibocconi.it>
License
GPL (>= 2)
Version
1.2.2
URLs

View on CRAN

Man pages

cip.2
Graph of the Conditional Intrinsic Prior for a Two Alleles...
cip.tmp
Utility Function
GuoThompson8
Guo and Thompson (1992) Eight Alleles Simulated Data
GuoThompson9
Guo and Thompson (1992) Nine Alleles Data
hwe.bf
Standard Bayes Factor for the Hardy-Weinebrg Testing Problem
HWEdata-class
Class "HWEdata". Data specification for the Hardy-Weinberg...
hwe.ibf
Testing Hardy-Weinberg Equilibrium Using an Intrinsic Prior...
hwe.ibf.mc
Testing Hardy-Weinberg Equilibrium Using an Intrinsic Prior...
hwe.ibf.plot
Plot of an Hardy-Weinberg Testing Analysis
HWEintr-class
Class "HWEintr". Result for the Hardy-Weinberg Testing...
HWEintrinsic-package
Hardy-Weinberg Equilibrium Testing using an Objective...
ip.2
Graph of the (Unconditional) Intrinsic Prior for a Two...
ip.tmp
Utility Function
lik.multin
Utility Function
Lindley
Lindley (1988) Two Alleles Data
LouisDempster
Louis and Dempster (1987) Four Alleles Data
plot-methods
Plot of Hardy-Weinberg Data and Analysis
simdata
Two Alleles Simulated Data
summary-methods
Summary of Hardy-Weinberg Data and Analysis
Wordsworth
Wordsworth et al. (1992) Four Alleles Data

Files in this package

HWEintrinsic
HWEintrinsic/NAMESPACE
HWEintrinsic/data
HWEintrinsic/data/simdata.rda
HWEintrinsic/data/LouisDempster.rda
HWEintrinsic/data/GuoThompson8.rda
HWEintrinsic/data/Lindley.rda
HWEintrinsic/data/GuoThompson9.rda
HWEintrinsic/data/Wordsworth.rda
HWEintrinsic/R
HWEintrinsic/R/AllClasses.R
HWEintrinsic/R/HWEintrinsic.R
HWEintrinsic/MD5
HWEintrinsic/DESCRIPTION
HWEintrinsic/man
HWEintrinsic/man/summary-methods.Rd
HWEintrinsic/man/cip.tmp.Rd
HWEintrinsic/man/HWEintrinsic-package.Rd
HWEintrinsic/man/plot-methods.Rd
HWEintrinsic/man/GuoThompson9.Rd
HWEintrinsic/man/Lindley.Rd
HWEintrinsic/man/GuoThompson8.Rd
HWEintrinsic/man/lik.multin.Rd
HWEintrinsic/man/hwe.ibf.Rd
HWEintrinsic/man/hwe.ibf.mc.Rd
HWEintrinsic/man/ip.2.Rd
HWEintrinsic/man/ip.tmp.Rd
HWEintrinsic/man/Wordsworth.Rd
HWEintrinsic/man/simdata.Rd
HWEintrinsic/man/hwe.ibf.plot.Rd
HWEintrinsic/man/HWEdata-class.Rd
HWEintrinsic/man/hwe.bf.Rd
HWEintrinsic/man/LouisDempster.Rd
HWEintrinsic/man/HWEintr-class.Rd
HWEintrinsic/man/cip.2.Rd