HWEintrinsic: Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
Version 1.2.2

General (multi-allelic) Hardy-Weinberg equilibrium problem from an objective Bayesian testing standpoint. This aim is achieved through the identification of a class of priors specifically designed for this testing problem. A class of intrinsic priors under the full model is considered. This class is indexed by a tuning quantity, the training sample size, as discussed in Consonni, Moreno and Venturini (2010). These priors are objective, satisfy Savage's continuity condition and have proved to behave extremely well for many statistical testing problems.

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AuthorSergio Venturini
Date of publication2015-07-08 00:29:41
MaintainerSergio Venturini <sergio.venturini@unibocconi.it>
LicenseGPL (>= 2)
Version1.2.2
URL http://onlinelibrary.wiley.com/doi/10.1002/sim.4084/abstract
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HWEintrinsic")

Man pages

cip.2: Graph of the Conditional Intrinsic Prior for a Two Alleles...
cip.tmp: Utility Function
GuoThompson8: Guo and Thompson (1992) Eight Alleles Simulated Data
GuoThompson9: Guo and Thompson (1992) Nine Alleles Data
hwe.bf: Standard Bayes Factor for the Hardy-Weinebrg Testing Problem
HWEdata-class: Class "HWEdata". Data specification for the Hardy-Weinberg...
hwe.ibf: Testing Hardy-Weinberg Equilibrium Using an Intrinsic Prior...
hwe.ibf.mc: Testing Hardy-Weinberg Equilibrium Using an Intrinsic Prior...
hwe.ibf.plot: Plot of an Hardy-Weinberg Testing Analysis
HWEintr-class: Class "HWEintr". Result for the Hardy-Weinberg Testing...
HWEintrinsic-package: Hardy-Weinberg Equilibrium Testing using an Objective...
ip.2: Graph of the (Unconditional) Intrinsic Prior for a Two...
ip.tmp: Utility Function
lik.multin: Utility Function
Lindley: Lindley (1988) Two Alleles Data
LouisDempster: Louis and Dempster (1987) Four Alleles Data
plot-methods: Plot of Hardy-Weinberg Data and Analysis
simdata: Two Alleles Simulated Data
summary-methods: Summary of Hardy-Weinberg Data and Analysis
Wordsworth: Wordsworth et al. (1992) Four Alleles Data

Functions

GuoThompson8 Man page
GuoThompson9 Man page
HWEdata Man page
HWEdata-class Man page
HWEintr Man page
HWEintr-class Man page
HWEintrinsic Man page
HWEintrinsic-package Man page
Lindley Man page
LouisDempster Man page
Wordsworth Man page
cip.2 Man page Source code
cip.tmp Man page Source code
dataL1 Man page
dataL2 Man page
dataL3 Man page
dataL4 Man page
dataset1 Man page
dataset2 Man page
dataset3 Man page
dataset4 Man page
hwe.bf Man page Source code
hwe.ibf Man page Source code
hwe.ibf.mc Man page Source code
hwe.ibf.plot Man page Source code
initialize,HWEdata-method Man page
initialize,HWEintr-method Man page
ip.2 Man page Source code
ip.tmp Man page Source code
lik.multin Man page Source code
onAttach Source code
plot,ANY,ANY-method Man page
plot,HWEdata,missing-method Man page
plot,HWEintr,missing-method Man page
plot-methods Man page
simdata Man page
summary,ANY-method Man page
summary,HWEdata-method Man page
summary,HWEintr-method Man page
summary-methods Man page

Files

NAMESPACE
data
data/simdata.rda
data/LouisDempster.rda
data/GuoThompson8.rda
data/Lindley.rda
data/GuoThompson9.rda
data/Wordsworth.rda
R
R/AllClasses.R
R/HWEintrinsic.R
MD5
DESCRIPTION
man
man/summary-methods.Rd
man/cip.tmp.Rd
man/HWEintrinsic-package.Rd
man/plot-methods.Rd
man/GuoThompson9.Rd
man/Lindley.Rd
man/GuoThompson8.Rd
man/lik.multin.Rd
man/hwe.ibf.Rd
man/hwe.ibf.mc.Rd
man/ip.2.Rd
man/ip.tmp.Rd
man/Wordsworth.Rd
man/simdata.Rd
man/hwe.ibf.plot.Rd
man/HWEdata-class.Rd
man/hwe.bf.Rd
man/LouisDempster.Rd
man/HWEintr-class.Rd
man/cip.2.Rd
HWEintrinsic documentation built on May 20, 2017, 1:05 a.m.