GuoThompson9: Guo and Thompson (1992) Nine Alleles Data

GuoThompson9R Documentation

Guo and Thompson (1992) Nine Alleles Data

Description

These data are extracted (Guo and Thompson, 1992) from the Rhesus data in Cavalli-Sforza and Bodmer (1971). They consists of information on 8297 individuals with r = 9 groups.

Usage

data(GuoThompson9)

Format

An object of class HWEdata.

Source

Guo, S.W. and Thompson, E.A. (1992), "Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles". Biometrics, Vol. 49, No. 2, 361–372.

References

Cavalli-Sforza, L. and Bodmer, W. (1971), "The Genetics of Human Populations". W.H. Freeman and Company, San Francisco. Consonni, G., Moreno, E., and Venturini, S. (2011). "Testing Hardy-Weinberg equilibrium: an objective Bayesian analysis". Statistics in Medicine, 30, 62–74. https://onlinelibrary.wiley.com/doi/10.1002/sim.4084/abstract

Examples

# Example 1 #
## Not run: 
# ATTENTION: the following code may take a long time to run! #

data(GuoThompson9)
plot(GuoThompson9)
n <- sum(GuoThompson9@data.vec, na.rm = TRUE)
out <- hwe.ibf.mc(GuoThompson9, t = n/2, M = 100000, verbose = TRUE)
summary(out, plot = TRUE)

## End(Not run)

# Example 2 #
## Not run: 
# ATTENTION: the following code may take a long time to run! #

M <- 300000
f <- seq(.1, 1, .05)
n <- sum(GuoThompson9@data.vec, na.rm = TRUE)
out <- hwe.ibf.plot(y = GuoThompson9, t.vec = round(f*n), M = M)

## End(Not run)

HWEintrinsic documentation built on Sept. 8, 2023, 5:56 p.m.