GuoThompson9: Guo and Thompson (1992) Nine Alleles Data

Description Usage Format Source References Examples

Description

These data are extracted (Guo and Thompson, 1992) from the Rhesus data in Cavalli-Sforza and Bodmer (1971). They consists of information on 8297 individuals with r = 9 groups.

Usage

1

Format

An object of class HWEdata.

Source

Guo, S.W. and Thompson, E.A. (1992), "Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles". Biometrics, Vol. 49, No. 2, 361–372.

References

Cavalli-Sforza, L. and Bodmer, W. (1971), "The Genetics of Human Populations". W.H. Freeman and Company, San Francisco. Consonni, G., Moreno, E., and Venturini, S. (2011). "Testing Hardy-Weinberg equilibrium: an objective Bayesian analysis". Statistics in Medicine, 30, 62–74. http://onlinelibrary.wiley.com/doi/10.1002/sim.4084/abstract

Examples

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# Example 1 #
## Not run: 
# ATTENTION: the following code may take a long time to run! #

data(GuoThompson9)
plot(GuoThompson9)
n <- sum(GuoThompson9@data.vec, na.rm = TRUE)
out <- hwe.ibf.mc(GuoThompson9, t = n/2, M = 100000, verbose = TRUE)
summary(out, plot = TRUE)

## End(Not run)

# Example 2 #
## Not run: 
# ATTENTION: the following code may take a long time to run! #

M <- 300000
f <- seq(.1, 1, .05)
n <- sum(GuoThompson9@data.vec, na.rm = TRUE)
out <- hwe.ibf.plot(y = GuoThompson9, t.vec = round(f*n), M = M)

## End(Not run)

HWEintrinsic documentation built on May 2, 2019, 12:20 p.m.