HWxtest: Exact Tests for Hardy-Weinberg Proportions
Version 1.1.7

Tests whether a set of genotype counts fits the HW expectations. Exact tests performed by an efficient algorithm. Included test statistics are likelihood ratio, probability, U-score and Pearson's X2.

AuthorBill Engels <wrengels@wisc.edu>
Date of publication2016-01-13 23:01:13
MaintainerBill Engels <wrengels@wisc.edu>
LicenseGPL
Version1.1.7
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HWxtest")

Popular man pages

genepop.to.genind: Imports a '.txt' file in 'GenePop' format into an object of...
histogramFunctions: Functions to plot a histogram of test statistic
hwdf: Construct a data frame from 'hwx.test' output
mungeData: mungeData
observedStatistics: Compute observed statistics for a genotype count matrix
print.hwtest: S3 Method for printing 'hwtest' objects
xcount: Find Exact Number of Genotype Tables
See all...

All man pages Function index File listing

Man pages

acount: Find Approximate Number of Genotype Tables
genepop.to.genind: Imports a '.txt' file in 'GenePop' format into an object of...
histogramFunctions: Functions to plot a histogram of test statistic
HWcases: This is a data file with some HW examples in matrix form
hwdf: Construct a data frame from 'hwx.test' output
hwx.test: Test for HW by either full enumeration or Monte Carlo.
listify: Convert results of 'hwx.test' to a single list of 'hwtest'...
mtest: Performs an "exact" test using Monte Carlo trials for...
mungeData: mungeData
observedStatistics: Compute observed statistics for a genotype count matrix
print.hwtest: S3 Method for printing 'hwtest' objects
p.value: Extract just the P value(s) from a Hardy-Weinberg test.
whales.df: Bowhead whale data from Morin et al. 2012
xcount: Find Exact Number of Genotype Tables
xcountCutoff: Determine immediately whether number of tables is over a...
xtest: Performs an exact test with full enumeration for...

Functions

HWcases Man page
acount Man page Source code
acount.genotype Source code
acount.integer Source code
acount.logical Source code
acount.matrix Source code
acount.numeric Source code
acount.table Source code
alleleCounts Man page Source code
clearUpper Man page Source code
defaultHistobounds Man page Source code
df.to.matrices Man page Source code
fillUpper Man page Source code
genepop.to.genind Man page Source code
hwdf Man page Source code
hwx.test Man page Source code
hwx.test.data.frame Source code
hwx.test.genind Source code
hwx.test.genotype Source code
hwx.test.integer Source code
hwx.test.list Source code
hwx.test.logical Source code
hwx.test.matrix Source code
hwx.test.numeric Source code
hwx.test.table Source code
listify Man page Source code
makeHistogram Man page Source code
matrix.to.vec Man page Source code
mtest Man page Source code
observedLLR Man page Source code
observedProb Man page Source code
observedU Man page Source code
observedX2 Man page Source code
onAttach Source code
p.value Man page Source code
p.value.genotype Source code
p.value.hwtest Source code
p.value.integer Source code
p.value.list Source code
p.value.logical Source code
p.value.matrix Source code
p.value.numeric Source code
p.value.table Source code
perfectProb Source code
print.hwtest Man page Source code
remove.missing.alleles Man page Source code
vec.to.matrix Man page Source code
whales.df Man page
xcount Man page Source code
xcount.genotype Source code
xcount.integer Source code
xcount.logical Source code
xcount.matrix Source code
xcount.numeric Source code
xcount.table Source code
xcountCutoff Man page Source code
xcountCutoff.integer Source code
xcountCutoff.matrix Source code
xcountCutoff.numeric Source code
xtest Man page Source code

Files

inst
inst/doc
inst/doc/HWxtest.html
inst/doc/HWxtest.Rmd
inst/doc/HWxtest.R
src
src/HWxtest.c
src/HWxcount.c
src/HWmtest.c
NAMESPACE
data
data/whales.df.rda
data/HWcases.rda
R
R/observedStats.R
R/hwx.test.R
R/xcountCutoff.R
R/xcount.R
R/mungeData.R
R/genepop.to.genind.R
R/print.hwtest.R
R/xtest.R
R/acount.R
R/histogram.R
R/mtest.R
R/datadoc.R
R/p.value.R
R/hwdf.R
R/zzz.R
vignettes
vignettes/bibHW.txt
vignettes/HWxtest.Rmd
vignettes/HWxtest.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/genepop.to.genind.Rd
man/acount.Rd
man/HWcases.Rd
man/histogramFunctions.Rd
man/hwdf.Rd
man/hwx.test.Rd
man/mtest.Rd
man/observedStatistics.Rd
man/print.hwtest.Rd
man/listify.Rd
man/whales.df.Rd
man/mungeData.Rd
man/xtest.Rd
man/xcountCutoff.Rd
man/p.value.Rd
man/xcount.Rd
HWxtest documentation built on May 19, 2017, 1:19 p.m.

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