HWxtest: Exact Tests for Hardy-Weinberg Proportions

Tests whether a set of genotype counts fits the HW expectations. Exact tests performed by an efficient algorithm. Included test statistics are likelihood ratio, probability, U-score and Pearson's X2.

Author
Bill Engels <wrengels@wisc.edu>
Date of publication
2016-01-13 23:01:13
Maintainer
Bill Engels <wrengels@wisc.edu>
License
GPL
Version
1.1.7

View on CRAN

Man pages

acount
Find Approximate Number of Genotype Tables
genepop.to.genind
Imports a '.txt' file in 'GenePop' format into an object of...
histogramFunctions
Functions to plot a histogram of test statistic
HWcases
This is a data file with some HW examples in matrix form
hwdf
Construct a data frame from 'hwx.test' output
hwx.test
Test for HW by either full enumeration or Monte Carlo.
listify
Convert results of 'hwx.test' to a single list of 'hwtest'...
mtest
Performs an "exact" test using Monte Carlo trials for...
mungeData
mungeData
observedStatistics
Compute observed statistics for a genotype count matrix
print.hwtest
S3 Method for printing 'hwtest' objects
p.value
Extract just the P value(s) from a Hardy-Weinberg test.
whales.df
Bowhead whale data from Morin et al. 2012
xcount
Find Exact Number of Genotype Tables
xcountCutoff
Determine immediately whether number of tables is over a...
xtest
Performs an exact test with full enumeration for...

Files in this package

HWxtest
HWxtest/inst
HWxtest/inst/doc
HWxtest/inst/doc/HWxtest.html
HWxtest/inst/doc/HWxtest.Rmd
HWxtest/inst/doc/HWxtest.R
HWxtest/src
HWxtest/src/HWxtest.c
HWxtest/src/HWxcount.c
HWxtest/src/HWmtest.c
HWxtest/NAMESPACE
HWxtest/data
HWxtest/data/whales.df.rda
HWxtest/data/HWcases.rda
HWxtest/R
HWxtest/R/observedStats.R
HWxtest/R/hwx.test.R
HWxtest/R/xcountCutoff.R
HWxtest/R/xcount.R
HWxtest/R/mungeData.R
HWxtest/R/genepop.to.genind.R
HWxtest/R/print.hwtest.R
HWxtest/R/xtest.R
HWxtest/R/acount.R
HWxtest/R/histogram.R
HWxtest/R/mtest.R
HWxtest/R/datadoc.R
HWxtest/R/p.value.R
HWxtest/R/hwdf.R
HWxtest/R/zzz.R
HWxtest/vignettes
HWxtest/vignettes/bibHW.txt
HWxtest/vignettes/HWxtest.Rmd
HWxtest/vignettes/HWxtest.md
HWxtest/MD5
HWxtest/build
HWxtest/build/vignette.rds
HWxtest/DESCRIPTION
HWxtest/man
HWxtest/man/genepop.to.genind.Rd
HWxtest/man/acount.Rd
HWxtest/man/HWcases.Rd
HWxtest/man/histogramFunctions.Rd
HWxtest/man/hwdf.Rd
HWxtest/man/hwx.test.Rd
HWxtest/man/mtest.Rd
HWxtest/man/observedStatistics.Rd
HWxtest/man/print.hwtest.Rd
HWxtest/man/listify.Rd
HWxtest/man/whales.df.Rd
HWxtest/man/mungeData.Rd
HWxtest/man/xtest.Rd
HWxtest/man/xcountCutoff.Rd
HWxtest/man/p.value.Rd
HWxtest/man/xcount.Rd