Description Usage Arguments Value Examples
#' Four measures of fit to HardyWeinberg for a given set of genotype counts may be computed.
observedProb
The probability of the observed set under the HW null and with the allele counts fixed.
observedLLR
The loglikelihood ratio of the observed set
observedU
The observed Uscore. Positive values indicate an excess of homozygotes and negative ones imply too many heterozygotes
observedX2
The classical “chisquared” statistic
1 2 3 4 5 6 7  observedProb(c)
observedLLR(c)
observedU(c)
observedX2(c, returnExpected = F)

c 
Matrix of observed genotype counts. Each number should be a nonnegative integer, and matrix is k x k. 
returnExpected 
Used in 
the observed statistic
1 2  t < vec.to.matrix(c(0,3,1,5,18,1,3,7,5,2))
observedStats < c(observedProb(t), observedLLR(t), observedU(t), observedX2(t))

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