HaploSim: Functions to simulate haplotypes
Version 1.8.4

Simulate haplotypes through meioses. Allows specification of population parameters.

Browse man pages Browse package API and functions Browse package files

AuthorAlbart Coster [aut, cre], John Bastiaansen [aut]
Date of publication2013-11-13 11:57:09
MaintainerAlbart Coster <albart@dairyconsult.nl>
LicenseGPL (>= 2)
Version1.8.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HaploSim")

Man pages

AssignQTL: Assigns QTL to a list of Haplotypes
buildhPedigree: Build a haplotype pedrigree from a haplotype list
getAll: Get alleles
haploList: Function to create objects of class 'haploList'
haploListClass: Class "haploList"
haplotype: Class "haplotype" ~~~
hPed2Ped: Transform a haplotype pedigree into a pedigree.
RemoveHomozygotes: Remove the homozygotic snp loci from a list of haplotypes
SampleBaseHaplotype: Simulate a base population haplotype
SampleHaplotype: Simulate a haplotype
SampleHaplotypes: Simulate a list of haplotypes
SamplePedigree: Simulate a haplotypes in a pedigree
validhaploListObject: Function to validate an object of class 'haploList'

Functions

AssignQTL Man page Source code
AssignSingleQTL Source code
Class Source code
ListQTL Man page Source code
RemoveHomozygotes Man page Source code
SampleBaseHaplotype Man page Source code
SampleHaplotype Man page Source code
SampleHaplotypes Man page Source code
SamplePedigree Man page Source code
[,haploList,ANY,missing-method Man page
buildhPedigree Man page Source code
c,haploList-method Man page
calcRecPos Source code
getAll Man page Source code
getOrig Source code
getnTrait Source code
hPed2Ped Man page Source code
haploList Man page Source code
haploList-class Man page
haplotype-class Man page
is.ordered.ped Source code
match.Call Source code
print,haploList-method Man page
print,haplotype-method Man page
print.haploList Source code
print.haplotype Source code
show,haploList-method Man page
show,haplotype-method Man page
validhaploListObject Man page Source code
validhaplotypePair Source code

Files

inst
inst/doc
inst/doc/HaploSim.pdf
NAMESPACE
R
R/getAll.R
R/print.haplotype.R
R/SamplePedigree.R
R/methods.r
R/makeHaplotypes.R
R/Classes.R
MD5
DESCRIPTION
man
man/AssignQTL.Rd
man/SampleBaseHaplotype.Rd
man/RemoveHomozygotes.Rd
man/SampleHaplotypes.Rd
man/SampleHaplotype.Rd
man/haploList.Rd
man/SamplePedigree.Rd
man/validhaploListObject.Rd
man/buildhPedigree.Rd
man/haploListClass.Rd
man/hPed2Ped.Rd
man/getAll.Rd
man/haplotype.Rd
HaploSim documentation built on May 19, 2017, 1:16 p.m.