HaploSim: Functions to simulate haplotypes

Share:

Simulate haplotypes through meioses. Allows specification of population parameters.

Author
Albart Coster [aut, cre], John Bastiaansen [aut]
Date of publication
2013-11-13 11:57:09
Maintainer
Albart Coster <albart@dairyconsult.nl>
License
GPL (>= 2)
Version
1.8.4

View on CRAN

Man pages

AssignQTL
Assigns QTL to a list of Haplotypes
buildhPedigree
Build a haplotype pedrigree from a haplotype list
getAll
Get alleles
haploList
Function to create objects of class 'haploList'
haploListClass
Class "haploList"
haplotype
Class "haplotype" ~~~
hPed2Ped
Transform a haplotype pedigree into a pedigree.
RemoveHomozygotes
Remove the homozygotic snp loci from a list of haplotypes
SampleBaseHaplotype
Simulate a base population haplotype
SampleHaplotype
Simulate a haplotype
SampleHaplotypes
Simulate a list of haplotypes
SamplePedigree
Simulate a haplotypes in a pedigree
validhaploListObject
Function to validate an object of class 'haploList'

Files in this package

HaploSim
HaploSim/inst
HaploSim/inst/doc
HaploSim/inst/doc/HaploSim.pdf
HaploSim/NAMESPACE
HaploSim/R
HaploSim/R/getAll.R
HaploSim/R/print.haplotype.R
HaploSim/R/SamplePedigree.R
HaploSim/R/methods.r
HaploSim/R/makeHaplotypes.R
HaploSim/R/Classes.R
HaploSim/MD5
HaploSim/DESCRIPTION
HaploSim/man
HaploSim/man/AssignQTL.Rd
HaploSim/man/SampleBaseHaplotype.Rd
HaploSim/man/RemoveHomozygotes.Rd
HaploSim/man/SampleHaplotypes.Rd
HaploSim/man/SampleHaplotype.Rd
HaploSim/man/haploList.Rd
HaploSim/man/SamplePedigree.Rd
HaploSim/man/validhaploListObject.Rd
HaploSim/man/buildhPedigree.Rd
HaploSim/man/haploListClass.Rd
HaploSim/man/hPed2Ped.Rd
HaploSim/man/getAll.Rd
HaploSim/man/haplotype.Rd