getAll: Get alleles

In HaploSim: Functions to Simulate Haplotypes

Get alleles

Description

Extract the sequence of snp alleles from a list of objects of class haplotype.

Usage

getAll(hList,what = c("snp","qtl"),removeHomozygotes =
FALSE,translatePos = TRUE)

Arguments

hList	List of objects of class haplotype.
what	Specifies if snp or qtl alleles are extracted from haplotype objects.
removeHomozygotes	If TRUE, homozygote genotypes are removed from the marker data.
translatePos	Translates marker positions to positions in Morgan, else keeps the positions as integers.

Details

Function removes homozygous snp loci before extracting these.

Value

Matrix.

Examples

example(AssignQTL)
hh <- getAll(hList = hList)
qq <- getAll(hList = hList,what = 'qtl')

HaploSim documentation built on Aug. 14, 2022, 1:06 a.m.