| AssignQTL | Assigns QTL to a list of Haplotypes |
| buildhPedigree | Build a haplotype pedrigree from a haplotype list |
| getAll | Get alleles |
| haploList | Function to create objects of class 'haploList' |
| haploListClass | Class "haploList" |
| haplotype | Class "haplotype" ~~~ |
| hPed2Ped | Transform a haplotype pedigree into a pedigree. |
| RemoveHomozygotes | Remove the homozygotic snp loci from a list of haplotypes |
| SampleBaseHaplotype | Simulate a base population haplotype |
| SampleHaplotype | Simulate a haplotype |
| SampleHaplotypes | Simulate a list of haplotypes |
| SamplePedigree | Simulate a haplotypes in a pedigree |
| validhaploListObject | Function to validate an object of class 'haploList' |
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