HelpersMG: Tools for Earth Meteorological Analysis

Contains many functions useful for managing 'NetCDF' files (see http://en.wikipedia.org/wiki/NetCDF), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.

Author
Marc Girondot
Date of publication
2016-10-01 17:53:47
Maintainer
Marc Girondot <marc.girondot@u-psud.fr>
License
GPL-2
Version
1.7

View on CRAN

Man pages

asc
Return the codes (in UTF-8) of a string
as.mcmc.mcmcComposite
Extract mcmc object from a mcmcComposite object
as.parameters
Extract parameters from mcmcComposite object
barplot_errbar
Plot a barplot graph with error bar on y
ChangeCoordinate
Return a value in a changed coordinate
chr
Return the characters defined by the codes
clean.knitr
Delete temporary files created during knitr compile
compare_AIC
Compares the AIC of several outputs
convert.tz
Convert one Date-Time from one timezone to another
DIx
Return an index of quantitative asymmetry and complexity...
dSnbinom
Density for the sum of random variable with negative binomial...
growlnotify
Send growl notification for MacOs X system.
HelpersMG-package
Tools for Earth Meteorological Analysis
index.periodic
Estimate indices in periodic timeseries based on anchored...
ind_long_lat
Return or the index in ncdf object from lat/longitude or...
inside.search
Search a string within files of a folder
LD50
Estimate the parameters that best describe LD50
local.search
Return path of file searched for in local disk based on its...
logLik.LD50
Return Log Likelihood of a fit generated by LD50
merge.mcmcComposite
Merge two mcmcComposite results
MHalgoGen
Monte-Carlo Markov-chain with Metropolis-Hastings algorithm
minmax.periodic
Search for minimum and maximum indices in periodic timeseries
modeled.hist
Return the theoretical value for the histogram bar
modifyVector
Modifies Elements of a Vector
moon.info
Moon phase based on a date
newcompassRose
Display a compass rose
newmap.scale
Add Scale to Existing Unprojected Map
plot_add
Add a plot to a previous one
plot_errbar
Plot a xy graph with error bar on x and/or y
plot.LD50
Plot results of LD50() that best describe LD50
plot.mcmcComposite
Plot the result of a mcmcComposite object
predict.LD50
Estimate survival according to doses
pSnbinom
Distribution function for the sum of random variable with...
qSnbinom
Quantile function for the sum of random variable with...
read_folder
Read files present in a folder and creates a list with the...
rSnbinom
Random generation for the sum of random variable with...
ScalePreviousPlot
Return the scale of the previous plot
similar
Test if two vectors contains the same elements independently...
summary.mcmcComposite
Summarize the result of a mcmcComposite object
sun.info
Estimate the time of sunrise and sunset according to...
symbol.Female
Plot a female symbol in the plotting region
symbol.Male
Plot a male symbol in the plotting region
symmetricize
Make a matrix symmetric
tide.info
Annual tide calendar for one particular location
wget
Download a file from internet and save it locally

Files in this package

HelpersMG
HelpersMG/inst
HelpersMG/inst/Tide
HelpersMG/inst/Tide/locationTide.rda
HelpersMG/NAMESPACE
HelpersMG/NEWS
HelpersMG/R
HelpersMG/R/symbol.Male.R
HelpersMG/R/DIx.R
HelpersMG/R/barplot_errbar.R
HelpersMG/R/modifyVector.R
HelpersMG/R/wget.R
HelpersMG/R/sun.info.R
HelpersMG/R/growlnotify.R
HelpersMG/R/ind_long_lat.R
HelpersMG/R/predict.LD50.R
HelpersMG/R/onAttach.R
HelpersMG/R/ScalePreviousPlot.R
HelpersMG/R/LD50_fit.R
HelpersMG/R/as.mcmc.mcmcComposite.R
HelpersMG/R/pSnbinom.R
HelpersMG/R/plot_errbar.R
HelpersMG/R/asc.R
HelpersMG/R/rSnbinom.R
HelpersMG/R/getTableAddressing.R
HelpersMG/R/read_folder.R
HelpersMG/R/logLik.LD50.R
HelpersMG/R/MHalgoGen.R
HelpersMG/R/plot.LD50.R
HelpersMG/R/inside.search.R
HelpersMG/R/merge.mcmcComposite.R
HelpersMG/R/symmetricize.R
HelpersMG/R/index.periodic.R
HelpersMG/R/dSnbinom.R
HelpersMG/R/convert.tz.R
HelpersMG/R/as.parameters.R
HelpersMG/R/symbol.Female.R
HelpersMG/R/local.search.R
HelpersMG/R/chr.R
HelpersMG/R/newmap.scale.R
HelpersMG/R/radioButtons_withHTML.R
HelpersMG/R/clean.knitr.R
HelpersMG/R/modeled.hist.R
HelpersMG/R/minmax.periodic.R
HelpersMG/R/tide.info.R
HelpersMG/R/BinomialConfidence.R
HelpersMG/R/newcompassRose.R
HelpersMG/R/plot_add.R
HelpersMG/R/compare_AIC.R
HelpersMG/R/HelpersMG-package.R
HelpersMG/R/plot.mcmcComposite.R
HelpersMG/R/LD50.R
HelpersMG/R/ChangeCoordinate.R
HelpersMG/R/summary.mcmcComposite.R
HelpersMG/R/qSnbinom.R
HelpersMG/R/permutations.R
HelpersMG/R/moon.info.R
HelpersMG/R/similar.R
HelpersMG/MD5
HelpersMG/DESCRIPTION
HelpersMG/man
HelpersMG/man/modeled.hist.Rd
HelpersMG/man/summary.mcmcComposite.Rd
HelpersMG/man/minmax.periodic.Rd
HelpersMG/man/symbol.Male.Rd
HelpersMG/man/predict.LD50.Rd
HelpersMG/man/pSnbinom.Rd
HelpersMG/man/newmap.scale.Rd
HelpersMG/man/plot_errbar.Rd
HelpersMG/man/qSnbinom.Rd
HelpersMG/man/ChangeCoordinate.Rd
HelpersMG/man/symmetricize.Rd
HelpersMG/man/as.parameters.Rd
HelpersMG/man/read_folder.Rd
HelpersMG/man/compare_AIC.Rd
HelpersMG/man/MHalgoGen.Rd
HelpersMG/man/ind_long_lat.Rd
HelpersMG/man/clean.knitr.Rd
HelpersMG/man/plot.LD50.Rd
HelpersMG/man/plot_add.Rd
HelpersMG/man/ScalePreviousPlot.Rd
HelpersMG/man/convert.tz.Rd
HelpersMG/man/asc.Rd
HelpersMG/man/symbol.Female.Rd
HelpersMG/man/rSnbinom.Rd
HelpersMG/man/HelpersMG-package.Rd
HelpersMG/man/newcompassRose.Rd
HelpersMG/man/LD50.Rd
HelpersMG/man/wget.Rd
HelpersMG/man/merge.mcmcComposite.Rd
HelpersMG/man/dSnbinom.Rd
HelpersMG/man/modifyVector.Rd
HelpersMG/man/inside.search.Rd
HelpersMG/man/growlnotify.Rd
HelpersMG/man/moon.info.Rd
HelpersMG/man/barplot_errbar.Rd
HelpersMG/man/chr.Rd
HelpersMG/man/similar.Rd
HelpersMG/man/local.search.Rd
HelpersMG/man/tide.info.Rd
HelpersMG/man/sun.info.Rd
HelpersMG/man/index.periodic.Rd
HelpersMG/man/plot.mcmcComposite.Rd
HelpersMG/man/logLik.LD50.Rd
HelpersMG/man/as.mcmc.mcmcComposite.Rd
HelpersMG/man/DIx.Rd