HelpersMG: Tools for Earth Meteorological Analysis

Contains many functions useful for managing 'NetCDF' files (see <http://en.wikipedia.org/wiki/NetCDF>), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.

AuthorMarc Girondot
Date of publication2017-03-10 11:49:45
MaintainerMarc Girondot <marc.girondot@u-psud.fr>
LicenseGPL-2
Version1.9

View on CRAN

Man pages

asc: Return the codes (in UTF-8) of a string

as.mcmc.mcmcComposite: Extract mcmc object from a mcmcComposite object

as.parameters: Extract parameters from mcmcComposite object

barplot_errbar: Plot a barplot graph with error bar on y

ChangeCoordinate: Return a value in a changed coordinate

chr: Return the characters defined by the codes

clean.knitr: Delete temporary files created during knitr compile

compare: Run a shiny application for basic functions of comparison

compare_AIC: Compares the AIC of several outputs

compare_AICc: Compares the AICc of several outputs

compare_BIC: Compares the BIC of several outputs

contingencyTable.compare: Contingency table comparison using Akaike weight

convert.tz: Convert one Date-Time from one timezone to another

DIx: Return an index of quantitative asymmetry and complexity...

dSnbinom: Density for the sum of random variable with negative binomial...

growlnotify: Send growl notification for MacOs X system.

HelpersMG-package: Tools for Earth Meteorological Analysis

index.periodic: Estimate indices in periodic timeseries based on anchored...

ind_long_lat: Return or the index in ncdf object from lat/longitude or...

inside.search: Search a string within files of a folder

LD50: Estimate the parameters that best describe LD50

local.search: Return path of file searched for in local disk based on its...

logLik.LD50: Return Log Likelihood of a fit generated by LD50

merge.mcmcComposite: Merge two mcmcComposite results

MHalgoGen: Monte-Carlo Markov-chain with Metropolis-Hastings algorithm

minmax.periodic: Search for minimum and maximum indices in periodic timeseries

modeled.hist: Return the theoretical value for the histogram bar

modifyVector: Modifies Elements of a Vector

moon.info: Moon phase based on a date

newcompassRose: Display a compass rose

newmap.scale: Add Scale to Existing Unprojected Map

plot_add: Add a plot to a previous one

plot_errbar: Plot a xy graph with error bar on x and/or y

plot.LD50: Plot results of LD50() that best describe LD50

plot.mcmcComposite: Plot the result of a mcmcComposite object

predict.LD50: Estimate survival according to doses

pSnbinom: Distribution function for the sum of random variable with...

qSnbinom: Quantile function for the sum of random variable with...

r2norm: Random generation for Gaussian distributions different at...

read_folder: Read files present in a folder and creates a list with the...

rSnbinom: Random generation for the sum of random variable with...

ScalePreviousPlot: Return the scale of the previous plot

series.compare: Data series comparison using Akaike weight

similar: Test if two vectors contains the same elements independently...

summary.mcmcComposite: Summarize the result of a mcmcComposite object

sun.info: Estimate the time of sunrise and sunset according to...

symbol.Female: Plot a female symbol in the plotting region

symbol.Male: Plot a male symbol in the plotting region

symmetricize: Make a matrix symmetric

tide.info: Annual tide calendar for one particular location

wget: Download a file from internet and save it locally

Functions

asc Man page
as.mcmc.mcmcComposite Man page
as.parameters Man page
barplot_errbar Man page
ChangeCoordinate Man page
chr Man page
clean.knitr Man page
compare Man page
compare_AIC Man page
compare_AICc Man page
compare_BIC Man page
contingencyTable.compare Man page
convert.tz Man page
DIx Man page
dSnbinom Man page
growlnotify Man page
HelpersMG-package Man page
index.periodic Man page
ind_long_lat Man page
inside.search Man page
LD50 Man page
local.search Man page
logLik.LD50 Man page
merge.mcmcComposite Man page
MHalgoGen Man page
minmax.periodic Man page
modeled.hist Man page
modifyVector Man page
moon.info Man page
newcompassRose Man page
newmap.scale Man page
plot_add Man page
plot_errbar Man page
plot.LD50 Man page
plot.mcmcComposite Man page
predict.LD50 Man page
pSnbinom Man page
qSnbinom Man page
r2norm Man page
read_folder Man page
rSnbinom Man page
ScalePreviousPlot Man page
series.compare Man page
similar Man page
summary.mcmcComposite Man page
sun.info Man page
symbol.Female Man page
symbol.Male Man page
symmetricize Man page
tide.info Man page
wget Man page

Files

HelpersMG
HelpersMG/inst
HelpersMG/inst/Tide
HelpersMG/inst/Tide/locationTide.rda
HelpersMG/inst/shiny
HelpersMG/inst/shiny/ui.R
HelpersMG/inst/shiny/server.R
HelpersMG/inst/shiny/www
HelpersMG/inst/shiny/www/PDF.png
HelpersMG/NAMESPACE
HelpersMG/NEWS
HelpersMG/R
HelpersMG/R/symbol.Male.R HelpersMG/R/series.compare.R HelpersMG/R/DIx.R HelpersMG/R/barplot_errbar.R HelpersMG/R/modifyVector.R HelpersMG/R/wget.R HelpersMG/R/sun.info.R HelpersMG/R/growlnotify.R HelpersMG/R/ind_long_lat.R HelpersMG/R/predict.LD50.R HelpersMG/R/onAttach.R HelpersMG/R/ScalePreviousPlot.R HelpersMG/R/LD50_fit.R HelpersMG/R/as.mcmc.mcmcComposite.R HelpersMG/R/pSnbinom.R HelpersMG/R/plot_errbar.R HelpersMG/R/compare_AICc.R HelpersMG/R/asc.R HelpersMG/R/rSnbinom.R HelpersMG/R/getTableAddressing.R HelpersMG/R/read_folder.R HelpersMG/R/logLik.LD50.R HelpersMG/R/MHalgoGen.R HelpersMG/R/plot.LD50.R HelpersMG/R/r2norm.R HelpersMG/R/inside.search.R HelpersMG/R/merge.mcmcComposite.R HelpersMG/R/symmetricize.R HelpersMG/R/index.periodic.R HelpersMG/R/nlConfint.R HelpersMG/R/dSnbinom.R HelpersMG/R/convert.tz.R HelpersMG/R/as.parameters.R HelpersMG/R/symbol.Female.R HelpersMG/R/local.search.R HelpersMG/R/chr.R HelpersMG/R/newmap.scale.R HelpersMG/R/radioButtons_withHTML.R HelpersMG/R/clean.knitr.R HelpersMG/R/modeled.hist.R HelpersMG/R/minmax.periodic.R HelpersMG/R/tide.info.R HelpersMG/R/BinomialConfidence.R HelpersMG/R/newcompassRose.R HelpersMG/R/plot_add.R HelpersMG/R/compare_AIC.R HelpersMG/R/HelpersMG-package.R HelpersMG/R/plot.mcmcComposite.R HelpersMG/R/LD50.R HelpersMG/R/compare_BIC.R HelpersMG/R/contingencyTable.compare.R HelpersMG/R/ChangeCoordinate.R HelpersMG/R/summary.mcmcComposite.R HelpersMG/R/qSnbinom.R HelpersMG/R/permutations.R HelpersMG/R/moon.info.R HelpersMG/R/similar.R HelpersMG/R/compare.R
HelpersMG/MD5
HelpersMG/DESCRIPTION
HelpersMG/man
HelpersMG/man/modeled.hist.Rd HelpersMG/man/summary.mcmcComposite.Rd HelpersMG/man/minmax.periodic.Rd HelpersMG/man/symbol.Male.Rd HelpersMG/man/predict.LD50.Rd HelpersMG/man/pSnbinom.Rd HelpersMG/man/newmap.scale.Rd HelpersMG/man/plot_errbar.Rd HelpersMG/man/qSnbinom.Rd HelpersMG/man/ChangeCoordinate.Rd HelpersMG/man/symmetricize.Rd HelpersMG/man/as.parameters.Rd HelpersMG/man/read_folder.Rd HelpersMG/man/r2norm.Rd HelpersMG/man/compare_AIC.Rd HelpersMG/man/MHalgoGen.Rd HelpersMG/man/ind_long_lat.Rd HelpersMG/man/clean.knitr.Rd HelpersMG/man/plot.LD50.Rd HelpersMG/man/plot_add.Rd HelpersMG/man/ScalePreviousPlot.Rd HelpersMG/man/convert.tz.Rd HelpersMG/man/asc.Rd HelpersMG/man/symbol.Female.Rd HelpersMG/man/rSnbinom.Rd HelpersMG/man/HelpersMG-package.Rd HelpersMG/man/newcompassRose.Rd HelpersMG/man/contingencyTable.compare.Rd HelpersMG/man/LD50.Rd HelpersMG/man/wget.Rd HelpersMG/man/merge.mcmcComposite.Rd HelpersMG/man/dSnbinom.Rd HelpersMG/man/modifyVector.Rd HelpersMG/man/series.compare.Rd HelpersMG/man/compare.Rd HelpersMG/man/inside.search.Rd HelpersMG/man/growlnotify.Rd HelpersMG/man/moon.info.Rd HelpersMG/man/barplot_errbar.Rd HelpersMG/man/chr.Rd HelpersMG/man/similar.Rd HelpersMG/man/local.search.Rd HelpersMG/man/compare_BIC.Rd HelpersMG/man/tide.info.Rd HelpersMG/man/sun.info.Rd HelpersMG/man/index.periodic.Rd HelpersMG/man/plot.mcmcComposite.Rd HelpersMG/man/logLik.LD50.Rd HelpersMG/man/compare_AICc.Rd HelpersMG/man/as.mcmc.mcmcComposite.Rd HelpersMG/man/DIx.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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