HelpersMG: Tools for Earth Meteorological Analysis
Version 1.9

Contains many functions useful for managing 'NetCDF' files (see ), get tide levels on any point of the globe, get moon phase and time for sun rise and fall, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.

Browse man pages Browse package API and functions Browse package files

AuthorMarc Girondot
Date of publication2017-03-10 11:49:45
MaintainerMarc Girondot <marc.girondot@u-psud.fr>
LicenseGPL-2
Version1.9
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HelpersMG")

Man pages

asc: Return the codes (in UTF-8) of a string
as.mcmc.mcmcComposite: Extract mcmc object from a mcmcComposite object
as.parameters: Extract parameters from mcmcComposite object
barplot_errbar: Plot a barplot graph with error bar on y
ChangeCoordinate: Return a value in a changed coordinate
chr: Return the characters defined by the codes
clean.knitr: Delete temporary files created during knitr compile
compare: Run a shiny application for basic functions of comparison
compare_AIC: Compares the AIC of several outputs
compare_AICc: Compares the AICc of several outputs
compare_BIC: Compares the BIC of several outputs
contingencyTable.compare: Contingency table comparison using Akaike weight
convert.tz: Convert one Date-Time from one timezone to another
DIx: Return an index of quantitative asymmetry and complexity...
dSnbinom: Density for the sum of random variable with negative binomial...
growlnotify: Send growl notification for MacOs X system.
HelpersMG-package: Tools for Earth Meteorological Analysis
index.periodic: Estimate indices in periodic timeseries based on anchored...
ind_long_lat: Return or the index in ncdf object from lat/longitude or...
inside.search: Search a string within files of a folder
LD50: Estimate the parameters that best describe LD50
local.search: Return path of file searched for in local disk based on its...
logLik.LD50: Return Log Likelihood of a fit generated by LD50
merge.mcmcComposite: Merge two mcmcComposite results
MHalgoGen: Monte-Carlo Markov-chain with Metropolis-Hastings algorithm
minmax.periodic: Search for minimum and maximum indices in periodic timeseries
modeled.hist: Return the theoretical value for the histogram bar
modifyVector: Modifies Elements of a Vector
moon.info: Moon phase based on a date
newcompassRose: Display a compass rose
newmap.scale: Add Scale to Existing Unprojected Map
plot_add: Add a plot to a previous one
plot_errbar: Plot a xy graph with error bar on x and/or y
plot.LD50: Plot results of LD50() that best describe LD50
plot.mcmcComposite: Plot the result of a mcmcComposite object
predict.LD50: Estimate survival according to doses
pSnbinom: Distribution function for the sum of random variable with...
qSnbinom: Quantile function for the sum of random variable with...
r2norm: Random generation for Gaussian distributions different at...
read_folder: Read files present in a folder and creates a list with the...
rSnbinom: Random generation for the sum of random variable with...
ScalePreviousPlot: Return the scale of the previous plot
series.compare: Data series comparison using Akaike weight
similar: Test if two vectors contains the same elements independently...
summary.mcmcComposite: Summarize the result of a mcmcComposite object
sun.info: Estimate the time of sunrise and sunset according to...
symbol.Female: Plot a female symbol in the plotting region
symbol.Male: Plot a male symbol in the plotting region
symmetricize: Make a matrix symmetric
tide.info: Annual tide calendar for one particular location
wget: Download a file from internet and save it locally

Functions

Arrowhead Source code
Arrows Source code
BinomialConfidence Source code
ChangeCoordinate Man page Source code
D50_fit Source code
DIx Man page Source code
HelpersMG-package Man page
LD50 Man page Source code
MHalgoGen Man page Source code
ScalePreviousPlot Man page Source code
as.mcmc.mcmcComposite Man page Source code
as.parameters Man page Source code
asc Man page Source code
barplot_errbar Man page Source code
chr Man page Source code
clean.knitr Man page Source code
compare Man page Source code
compare_AIC Man page Source code
compare_AICc Man page Source code
compare_BIC Man page Source code
contingencyTable.compare Man page Source code
convert.tz Man page Source code
dSnbinom Man page Source code
getTableAddressing Source code
getint Source code
growlnotify Man page Source code
ind_long_lat Man page Source code
index.periodic Man page Source code
inside.search Man page Source code
local.search Man page Source code
logLik.LD50 Man page Source code
merge.mcmcComposite Man page Source code
minmax.periodic Man page Source code
modelLD50 Source code
modeled.hist Man page Source code
modifyVector Man page Source code
moon.info Man page Source code
newcompassRose Man page Source code
newmap.scale Man page Source code
nlConfint Source code
onAttach Source code
pSnbinom Man page Source code
permutations Source code
plot.LD50 Man page Source code
plot.mcmcComposite Man page Source code
plot_add Man page Source code
plot_errbar Man page Source code
predict.LD50 Man page Source code
qSnbinom Man page Source code
r2norm Man page Source code
rSnbinom Man page Source code
radioButtons_withHTML Source code
read_folder Man page Source code
series.compare Man page Source code
similar Man page Source code
summary.mcmcComposite Man page Source code
sun.info Man page Source code
symbol.Female Man page Source code
symbol.Male Man page Source code
symmetricize Man page Source code
tide.info Man page Source code
wget Man page Source code

Files

inst
inst/Tide
inst/Tide/locationTide.rda
inst/shiny
inst/shiny/ui.R
inst/shiny/server.R
inst/shiny/www
inst/shiny/www/PDF.png
NAMESPACE
NEWS
R
R/symbol.Male.R
R/series.compare.R
R/DIx.R
R/barplot_errbar.R
R/modifyVector.R
R/wget.R
R/sun.info.R
R/growlnotify.R
R/ind_long_lat.R
R/predict.LD50.R
R/onAttach.R
R/ScalePreviousPlot.R
R/LD50_fit.R
R/as.mcmc.mcmcComposite.R
R/pSnbinom.R
R/plot_errbar.R
R/compare_AICc.R
R/asc.R
R/rSnbinom.R
R/getTableAddressing.R
R/read_folder.R
R/logLik.LD50.R
R/MHalgoGen.R
R/plot.LD50.R
R/r2norm.R
R/inside.search.R
R/merge.mcmcComposite.R
R/symmetricize.R
R/index.periodic.R
R/nlConfint.R
R/dSnbinom.R
R/convert.tz.R
R/as.parameters.R
R/symbol.Female.R
R/local.search.R
R/chr.R
R/newmap.scale.R
R/radioButtons_withHTML.R
R/clean.knitr.R
R/modeled.hist.R
R/minmax.periodic.R
R/tide.info.R
R/BinomialConfidence.R
R/newcompassRose.R
R/plot_add.R
R/compare_AIC.R
R/HelpersMG-package.R
R/plot.mcmcComposite.R
R/LD50.R
R/compare_BIC.R
R/contingencyTable.compare.R
R/ChangeCoordinate.R
R/summary.mcmcComposite.R
R/qSnbinom.R
R/permutations.R
R/moon.info.R
R/similar.R
R/compare.R
MD5
DESCRIPTION
man
man/modeled.hist.Rd
man/summary.mcmcComposite.Rd
man/minmax.periodic.Rd
man/symbol.Male.Rd
man/predict.LD50.Rd
man/pSnbinom.Rd
man/newmap.scale.Rd
man/plot_errbar.Rd
man/qSnbinom.Rd
man/ChangeCoordinate.Rd
man/symmetricize.Rd
man/as.parameters.Rd
man/read_folder.Rd
man/r2norm.Rd
man/compare_AIC.Rd
man/MHalgoGen.Rd
man/ind_long_lat.Rd
man/clean.knitr.Rd
man/plot.LD50.Rd
man/plot_add.Rd
man/ScalePreviousPlot.Rd
man/convert.tz.Rd
man/asc.Rd
man/symbol.Female.Rd
man/rSnbinom.Rd
man/HelpersMG-package.Rd
man/newcompassRose.Rd
man/contingencyTable.compare.Rd
man/LD50.Rd
man/wget.Rd
man/merge.mcmcComposite.Rd
man/dSnbinom.Rd
man/modifyVector.Rd
man/series.compare.Rd
man/compare.Rd
man/inside.search.Rd
man/growlnotify.Rd
man/moon.info.Rd
man/barplot_errbar.Rd
man/chr.Rd
man/similar.Rd
man/local.search.Rd
man/compare_BIC.Rd
man/tide.info.Rd
man/sun.info.Rd
man/index.periodic.Rd
man/plot.mcmcComposite.Rd
man/logLik.LD50.Rd
man/compare_AICc.Rd
man/as.mcmc.mcmcComposite.Rd
man/DIx.Rd
HelpersMG documentation built on May 19, 2017, 9:03 p.m.