Man pages for HiCociety
Inferring Chromatin Interaction Modules from 3C-Based Data
| add_Genes | Add gene information |
| calculate_avg_count | Calculate Average Count within 5-pixel Padding |
| check_package | Check if a package is installed |
| ConnectivityDiff | Connectivity difference between two conditions |
| get_all_chr_names | Retrieve chromosome names from .hic file |
| getContactFrequency | Get contact Frequency |
| getContactProbability | Contact probability |
| getElbowPoint | Estimation of elbow point from J-shaped-curve |
| get_example_hic_file | Example download |
| get_txdb | All available Txdb |
| hic2community | Create module objects from the Hi-C data |
| hic2network | HiC to network data format |
| visualizeModule | Visualization of module |
