get_all_chr_names: Retrieve chromosome names from .hic file
In HiCociety: Inferring Chromatin Interaction Modules from 3C-Based Data
get_all_chr_names R Documentation
Retrieve chromosome names from .hic file
Description
It retrieves all chromosome names having longer than 2.5Mbp.
Usage
get_all_chr_names(fname)
Arguments
fname
Path to .hic file
Details
To extract all chromosome names from .hic file
Value
A character vector containing the names of chromosomes whose genomic lengths exceed 2.5 Mbp.
Author(s)
Sora Yoon, PhD
Examples
myhic=system.file('extdata', 'example.hic', package ='HiCocietyExample')
get_all_chr_names(myhic)
HiCociety documentation built on Feb. 16, 2026, 5:10 p.m.
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| get_all_chr_names | R Documentation |
Retrieve chromosome names from .hic file
Description
It retrieves all chromosome names having longer than 2.5Mbp.
Usage
get_all_chr_names(fname)
Arguments
fname |
Path to .hic file |
Details
To extract all chromosome names from .hic file
Value
A character vector containing the names of chromosomes whose genomic lengths exceed 2.5 Mbp.
Author(s)
Sora Yoon, PhD
Examples
myhic=system.file('extdata', 'example.hic', package ='HiCocietyExample')
get_all_chr_names(myhic)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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