hic2network: HiC to network data format
In HiCociety: Inferring Chromatin Interaction Modules from 3C-Based Data
hic2network R Documentation
HiC to network data format
Description
It converts Hi-C dataframe to network object.
Usage
hic2network(ftab)
Arguments
ftab
three-column data composed of locus1, locus2 and value
Details
Convert HiC to network data format
Value
An igraph object representing statistically significant chromatin interactions.
Author(s)
Sora Yoon, PhD
Examples
# This example might take a long time to run, so we wrap it in donttest{}
myhic=system.file('extdata', 'example.hic', package ='HiCocietyExample')
ftab=getContactFrequency(myhic,19,5000);
net = hic2network(ftab[1:100,]);
plot(net)
HiCociety documentation built on Feb. 16, 2026, 5:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| hic2network | R Documentation |
HiC to network data format
Description
It converts Hi-C dataframe to network object.
Usage
hic2network(ftab)
Arguments
ftab |
three-column data composed of locus1, locus2 and value |
Details
Convert HiC to network data format
Value
An igraph object representing statistically significant chromatin interactions.
Author(s)
Sora Yoon, PhD
Examples
# This example might take a long time to run, so we wrap it in donttest{}
myhic=system.file('extdata', 'example.hic', package ='HiCocietyExample')
ftab=getContactFrequency(myhic,19,5000);
net = hic2network(ftab[1:100,]);
plot(net)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.