HiveR: 2D and 3D Hive Plots for R

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Creates and plots 2D and 3D hive plots. Hive plots are a unique method of displaying networks of many types in which node properties are mapped to axes using meaningful properties rather than being arbitrarily positioned. The hive plot concept was invented by Martin Krzywinski at the Genome Science Center (www.hiveplot.net/). Keywords: networks, food webs, linnet, systems biology, bioinformatics.

Author
Bryan A. Hanson [aut, cre], Vesna Memisevic [ctb], Jonathan Chung [ctb]
Date of publication
2016-03-26 15:16:56
Maintainer
Bryan A. Hanson <hanson@depauw.edu>
License
GPL-3
Version
0.2.55
URLs

View on CRAN

Man pages

adj2HPD
Process an adjacency graph into a HivePlotData object
animateHive
Animate one or more 3D hive plots with an handy controller
Arroyo
Plant-pollinator data sets in hive plot data format
chkHPD
Verify the integrity of a hive plot data object
dot2HPD
Process a .dot graph file into a HivePlotData object
drawHiveSpline
Draw a 3D spline as part of a 3D hive plot
edge2HPD
Process an edge list into a HivePlotData object
HEC
A HivePlotData Object of the Hair Eye Color Data Set
HidingAnAxis
How to Hide An Axis in a Hive Plot, with Bonus 2 Plots on One...
HivePlotData
Hive Plot Data Objects
HiveR-package
2D and 3D Hive Plots for R
manipAxis
Modify the display of axes and nodes in a hive plot
mineHPD
Examine (mine) a HivePlotData object and extract information...
plotHive
Create a hive plot (2D or 3D)
ranHiveData
Generate random hive plot data
rcsr
Compute the details of a 3D spline for a hive plot edge
sph2cart
Convert spherical to Cartesian coordinates
sumHPD
Summarize a hive plot data object and optionally run some...

Files in this package

HiveR
HiveR/inst
HiveR/inst/CITATION
HiveR/inst/extdata
HiveR/inst/extdata/E_coli
HiveR/inst/extdata/E_coli/EdgeInst_TF.csv
HiveR/inst/extdata/E_coli/EdgeInst_P.csv
HiveR/inst/extdata/E_coli/README
HiveR/inst/extdata/E_coli/E_coli_P.dot
HiveR/inst/extdata/E_coli/NodeLabels_P.csv
HiveR/inst/extdata/E_coli/NodeInst_P.csv
HiveR/inst/extdata/E_coli/E_coli_TF.dot
HiveR/inst/extdata/Misc
HiveR/inst/extdata/Misc/GreenEye.jpg
HiveR/inst/extdata/Misc/BrownEye.jpg
HiveR/inst/extdata/Misc/HECgraphics.txt
HiveR/inst/extdata/Misc/HazelEye.jpg
HiveR/inst/extdata/Misc/README
HiveR/inst/extdata/Misc/HECnodes.txt
HiveR/inst/extdata/Misc/HECticks.txt
HiveR/inst/extdata/Misc/BlueEye.jpg
HiveR/inst/doc
HiveR/inst/doc/HiveR.Rnw
HiveR/inst/doc/HiveR.R
HiveR/inst/doc/HiveR.pdf
HiveR/NAMESPACE
HiveR/NEWS
HiveR/data
HiveR/data/HEC.RData
HiveR/data/Arroyo.RData
HiveR/data/Safari.RData
HiveR/R
HiveR/R/dot2HPD.R
HiveR/R/adj2HPD.R
HiveR/R/animateHive.R
HiveR/R/manipAxis.R
HiveR/R/mineHPD.R
HiveR/R/sumHPD.R
HiveR/R/sph2cart.R
HiveR/R/plotHive.R
HiveR/R/plot3dHive.R
HiveR/R/rcsr.R
HiveR/R/ranHiveData.R
HiveR/R/chkHPD.R
HiveR/R/edge2HPD.R
HiveR/R/drawHiveSpline.R
HiveR/vignettes
HiveR/vignettes/graphics
HiveR/vignettes/graphics/Mapping_1a.pdf
HiveR/vignettes/graphics/VSEPR.pdf
HiveR/vignettes/graphics/plot3dHive_performance.pdf
HiveR/vignettes/graphics/Spline3D.png
HiveR/vignettes/graphics/Mapping_1ab.pdf
HiveR/vignettes/graphics/plotHive_performance.pdf
HiveR/vignettes/graphics/nature10719-f32_inset.jpg
HiveR/vignettes/graphics/nature10719-f32.jpg
HiveR/vignettes/graphics/HIVhuH3.png
HiveR/vignettes/HiveR.Rnw
HiveR/vignettes/network_tf_gene.parsed.dot
HiveR/vignettes/EdgeInst.csv
HiveR/vignettes/HIVhuH3.RData
HiveR/vignettes/HiveR.bib
HiveR/MD5
HiveR/build
HiveR/build/vignette.rds
HiveR/DESCRIPTION
HiveR/man
HiveR/man/Arroyo.Rd
HiveR/man/chkHPD.Rd
HiveR/man/HEC.Rd
HiveR/man/ranHiveData.Rd
HiveR/man/sph2cart.Rd
HiveR/man/dot2HPD.Rd
HiveR/man/manipAxis.Rd
HiveR/man/drawHiveSpline.Rd
HiveR/man/adj2HPD.Rd
HiveR/man/HivePlotData.Rd
HiveR/man/edge2HPD.Rd
HiveR/man/HidingAnAxis.Rd
HiveR/man/animateHive.Rd
HiveR/man/HiveR-package.Rd
HiveR/man/rcsr.Rd
HiveR/man/plotHive.Rd
HiveR/man/mineHPD.Rd
HiveR/man/sumHPD.Rd