This function modifies various aspects of a
HivePlotData object. A
typical use is to convert the radii from the native/absolute values in the
original object to either a normalized value (0...1) or to a ranked
value. The order of nodes on an axis can also be inverted, and an axis can
be pruned (removed) from the
An object of S3 class
Arguments to be passed downstream. Needed in this case for when
The rank method uses
ties.method = "first" so that each node gets a
unique radius. For pruning, the nodes and edges are removed and then the
remaining axes are renumbered to start from one. Exercise caution!
"scale" node radii will be multiplied by the corresponding value
in this argument. For
"invert" a value of -1 will cause the
corresponding axis to be inverted. For
"prune", a single value
specifying the axis to be pruned should be given. For
"action" will be subtracted from the node radii. For
"stretch", node radii will first be offset so that the minimum value
is zero, then multiplied by the values in
"action" to stretch the
axis. Depending upon the desired effect, one might use
"offset" or perhaps other combinations.
Bryan A. Hanson, DePauw University. firstname.lastname@example.org
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data(HEC) # The first 3 examples take advantage of the argument '...' # in plotHive, which passes action through to manipAxis on the fly. # For this particular data, norm and absolute scaling appear the same. plotHive(HEC, bkgnd = "white") # default is absolute positioning of nodes plotHive(HEC, method = "rank", bkgnd = "white") plotHive(HEC, method = "norm", bkgnd = "white") # In these examples, we'll explicitly use manipAxis and then plot # in a separate step. This is because trying to plot on the fly in # these cases will result in absolute scaling (which we do use here, # but one might not want to be forced to do so). HEC2 <- manipAxis(HEC, method = "invert", action = c(-1, 1)) plotHive(HEC2, bkgnd = "white") HEC3 <- manipAxis(HEC, method = "stretch", action = c(2, 3)) plotHive(HEC3, bkgnd = "white") HEC4 <- manipAxis(HEC, method = "offset", action = c(0, 1.5)) plotHive(HEC4, bkgnd = "white")
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