SyntheticTimeCourse: Synthetic Time Course data

In ICGE: Estimation of Number of Clusters and Identification of Atypical Units

Synthetic Time Course data

Description

Sythetic time course data where 210 genes profiles along 6 time points are reported and where the genes are drawn from 8 different populations.

Usage

data(SyntheticTimeCourse)

Format

Data frame with 120 rows and 7 columns.

Details

Attribute information: Column cl: the class that the gen belongs to. Columns t1 - t6: gene's expression along the t1, ..., t6 time points considered.

Examples

data(SyntheticTimeCourse)
x <- SyntheticTimeCourse[, 2:7]
cl <- SyntheticTimeCourse[, 1]
par(mfrow=c(3,3))
for (g in 1:8){ 
   xx <- t(x[cl==g,] )
   yy <- matrix(c(1:6 ), nrow=6, ncol=15, byrow=FALSE)
   matplot(yy,xx,  pch=21, type="b", axes=FALSE,  
        ylim=c(0,3.5), xlim=c(0.5,6.5), xlab="", ylab="", col="black", main=paste("G",g)) 
   abline(h=0)  
   abline(v=0.5) 
   mtext("Time", side=1) 
   mtext("Expression", side=2)  
}

ICGE documentation built on Oct. 17, 2022, 5:10 p.m.