check_cancer_types: Process Batch Table and Validate Cancer Types

In IOBR: Immune Oncology Biological Research

Process Batch Table and Validate Cancer Types

Description

Processes input data containing cancer types and validates each category against a predefined list of supported cancer types ('timer_available_cancers').

Usage

check_cancer_types(args)

Arguments

args	A list containing input parameters: batch Character. Path to a CSV file (optional). expression Character vector of expression identifiers (used if 'batch' is NULL). category Character vector of cancer types (used if 'batch' is NULL).

Value

A character matrix with two columns:

Column 1

Expression identifiers

Column 2

Cancer categories

Examples

args <- list(
  expression = c("exp1", "exp2"),
  category = c("luad", "brca"),
  batch = NULL
)
result <- check_cancer_types(args)

IOBR documentation built on May 30, 2026, 5:07 p.m.