deconvo_estimate: Calculate ESTIMATE Scores
In IOBR: Immune Oncology Biological Research

deconvo_estimate

R Documentation

Calculate ESTIMATE Scores

Description

Calculates stromal, immune, and ESTIMATE scores from gene expression.

Usage

deconvo_estimate(eset, project = NULL, platform = "affymetrix")

Arguments

`eset`	Gene expression matrix with gene symbols.
`project`	Optional project name. Default is 'NULL'.
`platform`	Platform type: '"affymetrix"' or '"illumina"'. Default is '"affymetrix"'.

Value

Data frame with ESTIMATE scores. Columns suffixed with '_estimate'.

Author(s)

Dongqiang Zeng

Examples

## Not run: 
common_genes <- load_data("common_genes")
if (!is.null(common_genes)) {
  set.seed(123)
  sim_eset <- matrix(rnorm(nrow(common_genes) * 2), nrow(common_genes), 2)
  rownames(sim_eset) <- common_genes$GeneSymbol
  colnames(sim_eset) <- paste0("Sample", 1:2)
  result <- deconvo_estimate(sim_eset, project = "TCGA-STAD")
  if (!is.null(result)) head(result)
}

## End(Not run)

IOBR documentation built on May 30, 2026, 5:07 p.m.