deconvo_ips: Calculate Immunophenoscore (IPS)
In IOBR: Immune Oncology Biological Research

deconvo_ips

R Documentation

Calculate Immunophenoscore (IPS)

Description

Calculates immune phenotype scores from gene expression data.

Usage

deconvo_ips(eset, project = NULL, plot = FALSE)

Arguments

`eset`	Gene expression matrix.
`project`	Optional project name. Default is 'NULL'.
`plot`	Logical: generate visualization. Default is 'FALSE'.

Value

Data frame with IPS scores. Columns suffixed with '_IPS'.

Author(s)

Dongqiang Zeng

Examples

## Not run: 
ips_genes <- load_data("ips_gene_set")
if (!is.null(ips_genes)) {
  set.seed(123)
  sim_eset <- matrix(rnorm(nrow(ips_genes) * 2), nrow(ips_genes), 2)
  rownames(sim_eset) <- ips_genes$GENE
  colnames(sim_eset) <- paste0("Sample", 1:2)
  result <- deconvo_ips(eset = sim_eset, project = "Example")
  if (!is.null(result)) head(result)
}

## End(Not run)

IOBR documentation built on May 30, 2026, 5:07 p.m.