Description Usage Arguments Details Value See Also Examples
View source: R/save.eigenplots.html.R
Generate HTML file called 'tree_scree.html' from the result of
ipcaps
. This function is a part of workflow in
save.plots
. The clustering result is shown as a tree rendering
by the online Google Organizational Chart library. Note that the Internet is
required to view the HTML file.
1 | save.eigenplots.html(output.dir)
|
output.dir |
A result directory as the |
After running, this function generates the file called 'tree_scree.html' in the same result directory. All plots are generated and saved as image files in the sub-directory 'images'.
NULL
save.html
,
save.plots
,
save.plots.cluster.html
,
and save.plots.label.html
1 2 3 4 5 6 7 8 9 10 | # Importantly, bed file, bim file, and fam file are required
# Use the example files embedded in the package
BED.file <- system.file("extdata","ipcaps_example.bed",package="IPCAPS")
LABEL.file <- system.file("extdata","ipcaps_example_individuals.txt.gz",package="IPCAPS")
my.cluster <- ipcaps(bed=BED.file,label.file=LABEL.file,lab.col=2,out=tempdir())
#Here, to generate HTML file
save.eigenplots.html(my.cluster$output.dir)
|
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