save.plots: Workflow to generate HTML files for all kinds of plots

Description Usage Arguments Details Value See Also Examples

Description

Generate HTML files and all image files (plots) from the result of ipcaps. The clustering result is shown as a tree rendering by the online Google Organizational Chart library. Note that the Internet is required to view the HTML files.

Usage

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save.plots(output.dir)

Arguments

output.dir

A result directory as the $output object returned from the ipcaps function.

Details

After running, this function generates all plots and saves as image files in the sub-directory 'images'. It calls save.plots.cluster.html, save.eigenplots.html, and save.plots.label.html to generate all HTML files.

Value

NULL

See Also

save.html, save.plots.cluster.html, save.eigenplots.html, and save.plots.label.html

Examples

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# Importantly, bed file, bim file, and fam file are required
# Use the example files embedded in the package


BED.file <- system.file("extdata","IPCAPS_example.bed",package="IPCAPS")
LABEL.file <- system.file("extdata","IPCAPS_example_individuals.txt",package="IPCAPS")

my.cluster <- ipcaps(bed=BED.file,label.file=LABEL.file,lab.col=2,out=tempdir())

#Here, to generate all plots and HTML files
save.plots.label.html(my.cluster$output.dir)

IPCAPS documentation built on May 2, 2019, 11:59 a.m.