save.html: Generate HTML file for clustering result in text mode
In IPCAPS: Iterative Pruning to Capture Population Structure

Description Usage Arguments Details Value See Also Examples

Generate HTML file called 'tree_text.html' from the result of ipcaps. The clustering result is shown as a tree rendering by the online Google Organizational Chart library. Note that the Internet is required to view the HTML file.

1	save.html(output.dir)

output.dir

A result directory as the $output object returned from the ipcaps function.

After running, this function generates the file called 'tree_text.html' in the same result directory.

NULL

save.plots, save.plots.cluster.html, save.eigenplots.html, and save.plots.label.html

# Importantly, bed file, bim file, and fam file are required
# Use the example files embedded in the package

BED.file <- system.file("extdata","ipcaps_example.bed",package="IPCAPS")
LABEL.file <- system.file("extdata","ipcaps_example_individuals.txt.gz",package="IPCAPS")

my.cluster <- ipcaps(bed=BED.file,label.file=LABEL.file,lab.col=2,out=tempdir())

#Here, to generate HTML file
save.html(my.cluster$output.dir)