IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays
Version 0.5.4

Package to import data generated by the Incucyte Zoom from Essen Biosciences and use this to fit dose response curves using the drc package.

Browse man pages Browse package API and functions Browse package files

AuthorPhil Chapman <phil.chapman@cruk.manchester.ac.uk>
Date of publication2016-04-23 14:21:03
MaintainerPhil Chapman <phil.chapman@cruk.manchester.ac.uk>
LicenseGPL-2
Version0.5.4
URL https://github.com/chapmandu2/IncucyteDRC
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("IncucyteDRC")

Man pages

calculateCutTimeForGrowthCurve: calculateCutTimeForGrowthCurve
calculateCutTimeForIDRCSet: calculateCutTimeForIDRCSet
calculateDRCData: calculateDRCData
calculateEC50: calculateEC50
exportDRCDataToDataFrame: exportDRCDataToDataFrame
exportDRCDataToDotmatics: exportDRCDataToDotmatics
exportDRCDataToPRISM: exportDRCDataToPRISM
exportEC50Data: exportEC50Data
fitDoseResponseCurve: fitDoseResponseCurve
fitGrowthCurvesGrouped: fitGrowthCurvesGrouped
fitGrowthCurvesIndividual: fitGrowthCurvesIndividual
importIncucyteData: importIncucyteData
importPlatemap: importPlatemap
importPlatemapXML: importPlatemapXML
IncucyteDRC-package: Dose Response Curves from Incucyte Proliferation Assays
makeIncucyteDRCSet: makeIncucyteDRCSet
plotDoseResponseCurve: plotDoseResponseCurve
plotIncucyteDRCSet: plotIncucyteDRCSet
plotPlatemap: plotPlatemap
populateIncucyteDRCSetMetadata: populateIncucyteDRCSetMetadata
print.IncucyteDRCPlateData: print.IncucyteDRCPlateData
print.IncucyteDRCSet: print.IncucyteDRCSet
print.IncucyteDRCSetList: print.IncucyteDRCSetList
shinyVisApp: Shiny Visualisation App
shinyVisServer: Shiny Visualisation Server
shinyVisUI: Shiny Visualisation UI
splitIncucyteDRCPlateData: splitIncucyteDRCPlateData

Functions

IncucyteDRC Man page
IncucyteDRC-package Man page
calculateCutTimeForGrowthCurve Man page Source code
calculateCutTimeForIDRCSet Man page Source code
calculateDRCData Man page Source code
calculateEC50 Man page Source code
exportDRCDataToDataFrame Man page Source code
exportDRCDataToDotmatics Man page Source code
exportDRCDataToPRISM Man page Source code
exportEC50Data Man page Source code
fitDoseResponseCurve Man page Source code
fitGrowthCurvesGrouped Man page Source code
fitGrowthCurvesIndividual Man page Source code
importIncucyteData Man page Source code
importPlatemap Man page Source code
importPlatemapXML Man page Source code
makeIncucyteDRCSet Man page Source code
plotDoseResponseCurve Man page Source code
plotIncucyteDRCSet Man page Source code
plotPlatemap Man page Source code
populateIncucyteDRCSetMetadata Man page Source code
print.IncucyteDRCPlateData Man page Source code
print.IncucyteDRCSet Man page Source code
print.IncucyteDRCSetList Man page Source code
shinyVisApp Man page Source code
shinyVisServer Man page Source code
shinyVisUI Man page Source code
splitIncucyteDRCPlateData Man page Source code

Files

inst
inst/tests
inst/tests/test_importPlatemap.R
inst/extdata
inst/extdata/example_platemap.txt
inst/extdata/example.PlateMap
inst/extdata/example2.PlateMap
inst/extdata/example_data.txt
inst/extdata/example_data2.txt
inst/doc
inst/doc/Overview.R
inst/doc/Overview.html
inst/doc/IncucyteZoomExport.html
inst/doc/IncucyteZoomExport.Rmd
inst/doc/Overview.Rmd
NAMESPACE
R
R/fitDoseResponseCurve.R
R/plotPlatemap.R
R/importPlatemapXML.R
R/aa_globalVars.R
R/exportDRCDataToDotmatics.R
R/calculateEC50.R
R/calculateCutTimeForGrowthCurve.R
R/printIncucyteDRCSet.R
R/plotIncucyteDRCSet.R
R/IncucyteDRC_documentation.R
R/printIncucyteDRCPlateData.R
R/exportEC50Data.R
R/exportDRCDataToDataFrame.R
R/makeIncucyteDRCSet.R
R/importIncucyteData.R
R/exportDRCDataToPRISM.R
R/shinyVisUI.R
R/printIncucyteDRCSetList.R
R/populateIncucyteDRCSetMetadata.R
R/plotDoseResponseCurve.R
R/splitIncucyteDRCPlateData.R
R/importPlatemap.R
R/shinyVisApp.R
R/fitGrowthCurvesIndividual.R
R/calculateCutTimeForIDRCSet.R
R/calculateDRCData.R
R/fitGrowthCurvesGrouped.R
R/shinyVisServer.R
vignettes
vignettes/IncucyteZoomExport1.jpg
vignettes/IncucyteZoomExport.Rmd
vignettes/IncucyteZoomExport2.jpg
vignettes/IncucyteZoomExport3.png
vignettes/Overview.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/fitGrowthCurvesIndividual.Rd
man/plotPlatemap.Rd
man/importIncucyteData.Rd
man/calculateCutTimeForGrowthCurve.Rd
man/fitDoseResponseCurve.Rd
man/exportDRCDataToDataFrame.Rd
man/exportDRCDataToDotmatics.Rd
man/shinyVisServer.Rd
man/calculateEC50.Rd
man/plotIncucyteDRCSet.Rd
man/populateIncucyteDRCSetMetadata.Rd
man/fitGrowthCurvesGrouped.Rd
man/print.IncucyteDRCSetList.Rd
man/shinyVisUI.Rd
man/importPlatemapXML.Rd
man/shinyVisApp.Rd
man/calculateCutTimeForIDRCSet.Rd
man/IncucyteDRC-package.Rd
man/exportDRCDataToPRISM.Rd
man/print.IncucyteDRCPlateData.Rd
man/importPlatemap.Rd
man/exportEC50Data.Rd
man/plotDoseResponseCurve.Rd
man/splitIncucyteDRCPlateData.Rd
man/print.IncucyteDRCSet.Rd
man/makeIncucyteDRCSet.Rd
man/calculateDRCData.Rd
IncucyteDRC documentation built on May 19, 2017, 9:05 p.m.