IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Package to import data generated by the Incucyte Zoom from Essen Biosciences and use this to fit dose response curves using the drc package.

Install the latest version of this package by entering the following in R:
install.packages("IncucyteDRC")
AuthorPhil Chapman <phil.chapman@cruk.manchester.ac.uk>
Date of publication2016-04-23 14:21:03
MaintainerPhil Chapman <phil.chapman@cruk.manchester.ac.uk>
LicenseGPL-2
Version0.5.4
https://github.com/chapmandu2/IncucyteDRC

View on CRAN

Functions

calculateCutTimeForGrowthCurve Man page
calculateCutTimeForIDRCSet Man page
calculateDRCData Man page
calculateEC50 Man page
exportDRCDataToDataFrame Man page
exportDRCDataToDotmatics Man page
exportDRCDataToPRISM Man page
exportEC50Data Man page
fitDoseResponseCurve Man page
fitGrowthCurvesGrouped Man page
fitGrowthCurvesIndividual Man page
importIncucyteData Man page
importPlatemap Man page
importPlatemapXML Man page
IncucyteDRC Man page
IncucyteDRC-package Man page
makeIncucyteDRCSet Man page
plotDoseResponseCurve Man page
plotIncucyteDRCSet Man page
plotPlatemap Man page
populateIncucyteDRCSetMetadata Man page
print.IncucyteDRCPlateData Man page
print.IncucyteDRCSet Man page
print.IncucyteDRCSetList Man page
shinyVisApp Man page
shinyVisServer Man page
shinyVisUI Man page
splitIncucyteDRCPlateData Man page

Files

inst
inst/tests
inst/tests/test_importPlatemap.R
inst/extdata
inst/extdata/example_platemap.txt
inst/extdata/example.PlateMap
inst/extdata/example2.PlateMap
inst/extdata/example_data.txt
inst/extdata/example_data2.txt
inst/doc
inst/doc/Overview.R
inst/doc/Overview.html
inst/doc/IncucyteZoomExport.html
inst/doc/IncucyteZoomExport.Rmd
inst/doc/Overview.Rmd
NAMESPACE
R
R/fitDoseResponseCurve.R R/plotPlatemap.R R/importPlatemapXML.R R/aa_globalVars.R R/exportDRCDataToDotmatics.R R/calculateEC50.R R/calculateCutTimeForGrowthCurve.R R/printIncucyteDRCSet.R R/plotIncucyteDRCSet.R R/IncucyteDRC_documentation.R R/printIncucyteDRCPlateData.R R/exportEC50Data.R R/exportDRCDataToDataFrame.R R/makeIncucyteDRCSet.R R/importIncucyteData.R R/exportDRCDataToPRISM.R R/shinyVisUI.R R/printIncucyteDRCSetList.R R/populateIncucyteDRCSetMetadata.R R/plotDoseResponseCurve.R R/splitIncucyteDRCPlateData.R R/importPlatemap.R R/shinyVisApp.R R/fitGrowthCurvesIndividual.R R/calculateCutTimeForIDRCSet.R R/calculateDRCData.R R/fitGrowthCurvesGrouped.R R/shinyVisServer.R
vignettes
vignettes/IncucyteZoomExport1.jpg
vignettes/IncucyteZoomExport.Rmd
vignettes/IncucyteZoomExport2.jpg
vignettes/IncucyteZoomExport3.png
vignettes/Overview.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/fitGrowthCurvesIndividual.Rd man/plotPlatemap.Rd man/importIncucyteData.Rd man/calculateCutTimeForGrowthCurve.Rd man/fitDoseResponseCurve.Rd man/exportDRCDataToDataFrame.Rd man/exportDRCDataToDotmatics.Rd man/shinyVisServer.Rd man/calculateEC50.Rd man/plotIncucyteDRCSet.Rd man/populateIncucyteDRCSetMetadata.Rd man/fitGrowthCurvesGrouped.Rd man/print.IncucyteDRCSetList.Rd man/shinyVisUI.Rd man/importPlatemapXML.Rd man/shinyVisApp.Rd man/calculateCutTimeForIDRCSet.Rd man/IncucyteDRC-package.Rd man/exportDRCDataToPRISM.Rd man/print.IncucyteDRCPlateData.Rd man/importPlatemap.Rd man/exportEC50Data.Rd man/plotDoseResponseCurve.Rd man/splitIncucyteDRCPlateData.Rd man/print.IncucyteDRCSet.Rd man/makeIncucyteDRCSet.Rd man/calculateDRCData.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.