IncucyteDRC: Dose Response Curves from Incucyte Proliferation Assays

Package to import data generated by the Incucyte Zoom from Essen Biosciences and use this to fit dose response curves using the drc package.

Author
Phil Chapman <phil.chapman@cruk.manchester.ac.uk>
Date of publication
2016-04-23 14:21:03
Maintainer
Phil Chapman <phil.chapman@cruk.manchester.ac.uk>
License
GPL-2
Version
0.5.4
URLs

View on CRAN

Man pages

calculateCutTimeForGrowthCurve
calculateCutTimeForGrowthCurve
calculateCutTimeForIDRCSet
calculateCutTimeForIDRCSet
calculateDRCData
calculateDRCData
calculateEC50
calculateEC50
exportDRCDataToDataFrame
exportDRCDataToDataFrame
exportDRCDataToDotmatics
exportDRCDataToDotmatics
exportDRCDataToPRISM
exportDRCDataToPRISM
exportEC50Data
exportEC50Data
fitDoseResponseCurve
fitDoseResponseCurve
fitGrowthCurvesGrouped
fitGrowthCurvesGrouped
fitGrowthCurvesIndividual
fitGrowthCurvesIndividual
importIncucyteData
importIncucyteData
importPlatemap
importPlatemap
importPlatemapXML
importPlatemapXML
IncucyteDRC-package
Dose Response Curves from Incucyte Proliferation Assays
makeIncucyteDRCSet
makeIncucyteDRCSet
plotDoseResponseCurve
plotDoseResponseCurve
plotIncucyteDRCSet
plotIncucyteDRCSet
plotPlatemap
plotPlatemap
populateIncucyteDRCSetMetadata
populateIncucyteDRCSetMetadata
print.IncucyteDRCPlateData
print.IncucyteDRCPlateData
print.IncucyteDRCSet
print.IncucyteDRCSet
print.IncucyteDRCSetList
print.IncucyteDRCSetList
shinyVisApp
Shiny Visualisation App
shinyVisServer
Shiny Visualisation Server
shinyVisUI
Shiny Visualisation UI
splitIncucyteDRCPlateData
splitIncucyteDRCPlateData

Files in this package

IncucyteDRC
IncucyteDRC/inst
IncucyteDRC/inst/tests
IncucyteDRC/inst/tests/test_importPlatemap.R
IncucyteDRC/inst/extdata
IncucyteDRC/inst/extdata/example_platemap.txt
IncucyteDRC/inst/extdata/example.PlateMap
IncucyteDRC/inst/extdata/example2.PlateMap
IncucyteDRC/inst/extdata/example_data.txt
IncucyteDRC/inst/extdata/example_data2.txt
IncucyteDRC/inst/doc
IncucyteDRC/inst/doc/Overview.R
IncucyteDRC/inst/doc/Overview.html
IncucyteDRC/inst/doc/IncucyteZoomExport.html
IncucyteDRC/inst/doc/IncucyteZoomExport.Rmd
IncucyteDRC/inst/doc/Overview.Rmd
IncucyteDRC/NAMESPACE
IncucyteDRC/R
IncucyteDRC/R/fitDoseResponseCurve.R
IncucyteDRC/R/plotPlatemap.R
IncucyteDRC/R/importPlatemapXML.R
IncucyteDRC/R/aa_globalVars.R
IncucyteDRC/R/exportDRCDataToDotmatics.R
IncucyteDRC/R/calculateEC50.R
IncucyteDRC/R/calculateCutTimeForGrowthCurve.R
IncucyteDRC/R/printIncucyteDRCSet.R
IncucyteDRC/R/plotIncucyteDRCSet.R
IncucyteDRC/R/IncucyteDRC_documentation.R
IncucyteDRC/R/printIncucyteDRCPlateData.R
IncucyteDRC/R/exportEC50Data.R
IncucyteDRC/R/exportDRCDataToDataFrame.R
IncucyteDRC/R/makeIncucyteDRCSet.R
IncucyteDRC/R/importIncucyteData.R
IncucyteDRC/R/exportDRCDataToPRISM.R
IncucyteDRC/R/shinyVisUI.R
IncucyteDRC/R/printIncucyteDRCSetList.R
IncucyteDRC/R/populateIncucyteDRCSetMetadata.R
IncucyteDRC/R/plotDoseResponseCurve.R
IncucyteDRC/R/splitIncucyteDRCPlateData.R
IncucyteDRC/R/importPlatemap.R
IncucyteDRC/R/shinyVisApp.R
IncucyteDRC/R/fitGrowthCurvesIndividual.R
IncucyteDRC/R/calculateCutTimeForIDRCSet.R
IncucyteDRC/R/calculateDRCData.R
IncucyteDRC/R/fitGrowthCurvesGrouped.R
IncucyteDRC/R/shinyVisServer.R
IncucyteDRC/vignettes
IncucyteDRC/vignettes/IncucyteZoomExport1.jpg
IncucyteDRC/vignettes/IncucyteZoomExport.Rmd
IncucyteDRC/vignettes/IncucyteZoomExport2.jpg
IncucyteDRC/vignettes/IncucyteZoomExport3.png
IncucyteDRC/vignettes/Overview.Rmd
IncucyteDRC/README.md
IncucyteDRC/MD5
IncucyteDRC/build
IncucyteDRC/build/vignette.rds
IncucyteDRC/DESCRIPTION
IncucyteDRC/man
IncucyteDRC/man/fitGrowthCurvesIndividual.Rd
IncucyteDRC/man/plotPlatemap.Rd
IncucyteDRC/man/importIncucyteData.Rd
IncucyteDRC/man/calculateCutTimeForGrowthCurve.Rd
IncucyteDRC/man/fitDoseResponseCurve.Rd
IncucyteDRC/man/exportDRCDataToDataFrame.Rd
IncucyteDRC/man/exportDRCDataToDotmatics.Rd
IncucyteDRC/man/shinyVisServer.Rd
IncucyteDRC/man/calculateEC50.Rd
IncucyteDRC/man/plotIncucyteDRCSet.Rd
IncucyteDRC/man/populateIncucyteDRCSetMetadata.Rd
IncucyteDRC/man/fitGrowthCurvesGrouped.Rd
IncucyteDRC/man/print.IncucyteDRCSetList.Rd
IncucyteDRC/man/shinyVisUI.Rd
IncucyteDRC/man/importPlatemapXML.Rd
IncucyteDRC/man/shinyVisApp.Rd
IncucyteDRC/man/calculateCutTimeForIDRCSet.Rd
IncucyteDRC/man/IncucyteDRC-package.Rd
IncucyteDRC/man/exportDRCDataToPRISM.Rd
IncucyteDRC/man/print.IncucyteDRCPlateData.Rd
IncucyteDRC/man/importPlatemap.Rd
IncucyteDRC/man/exportEC50Data.Rd
IncucyteDRC/man/plotDoseResponseCurve.Rd
IncucyteDRC/man/splitIncucyteDRCPlateData.Rd
IncucyteDRC/man/print.IncucyteDRCSet.Rd
IncucyteDRC/man/makeIncucyteDRCSet.Rd
IncucyteDRC/man/calculateDRCData.Rd