importPlatemapXML

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Description

Imports .Platemap XML files from Incucyte Zoom software and extracts information in the Compound, GrowthCondition and CellType fields.

Usage

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importPlatemapXML(filepath, control_cpd = "DMSO")

Arguments

filepath

Path to a .Platemap XML file generated by the Incucyte Zoom software

control_cpd

Specify the compound to use as baseline. Defaults to DMSO

Value

data frame

Examples

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#example data 1
pm_file <- system.file(file='extdata/example.PlateMap', package='IncucyteDRC')
test_pm <- importPlatemapXML(pm_file)
head(test_pm)

#example data 2
pm_file2 <- system.file(file='extdata/example2.PlateMap', package='IncucyteDRC')
test_pm2 <- importPlatemapXML(pm_file2)
head(test_pm2)