A demo dataset of different genomic characterizations and drug sensitivity selected from NCI-Dream Drug Sensitivity Prediction Challenge dataset.
A list of 6 variables containing genomic characterizations and drug sensitivity:
List of 5 Matrices where the matrices represent different genomic characterizations of Gene Expression, Methylation, RNA sequencing, Reverse Phase Protein Array (RPPA) and Copy Number Variation (CNV). 1000 predictor features for each subtype is included to satisfy package size limitations.
List of Cell Line names for each genomic charcterization
Drug Sensitivity of training samples (35) for 31 drugs provided for NCI-Dream Drug Sensitivity Prediction Challenge
Cell line names of the training samples
Drug Sensitivity of testing samples (18) for 31 drugs provided for NCI-Dream Drug Sensitivity Prediction Challenge Dataset
Cell line names of the testing samples
Costello, James C., et al. "A community effort to assess and improve drug sensitivity prediction algorithms." Nature biotechnology 32.12 (2014): 1202-1212.
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