text_index | R Documentation |
Creates the necessary configuration string for an adapter to a text index for gene name search in the browser.
text_index(ix_uri, ixx_uri, meta_uri, assembly)
ix_uri |
the URI for the ix file |
ixx_uri |
the URI for the ixx file |
meta_uri |
the URI for the JSON metadata file |
assembly |
the assembly associated with the text index |
Note: this function currently only supports aggregate indices.
For more information on JBrowse 2 text indices, visit: https://jbrowse.org/jb2/docs/config_guide/#text-searching
a character vector with the JSON text index adapter.
text_index(
"https://jbrowse.org/genomes/hg19/trix/hg19.ix",
"https://jbrowse.org/genomes/hg19/trix/hg19.ixx",
"https://jbrowse.org/genomes/hg19/trix/meta.json",
"hg19"
)
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