Creates the necessary configuration string for an indexed GFF3 file so that it can be used in a JBrowse custom linear genome view.
the URL to the GFF3 file
the config string generated by
It is important to note that while only the GFF3 file is
passed as an argument,
tracks_variant assumes that a GFF3
index of the same name is located with the file
data/features.gff.tbi also exists.
This is a JBrowse 2 convention, and the default naming output of tabix
For more information on creating an index with tabix, visit https://www.htslib.org/
a character vector of stringified FeatureTrack JSON configuration
assembly <- assembly("https://jbrowse.org/genomes/hg19/fasta/hg19.fa.gz", bgzip = TRUE) track_feature("features.gff", assembly)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.