JMbayes: Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
Version 0.8-0

Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.

Browse man pages Browse package API and functions Browse package files

AuthorDimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Date of publication2016-08-25 09:59:07
MaintainerDimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
LicenseGPL (>= 2)
Version0.8-0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("JMbayes")

Man pages

aids: Didanosine versus Zalcitabine in HIV Patients
anova: Anova Method for Fitted Joint Models
aucJM: Time-Dependent ROCs and AUCs for Joint Models
bma.combine: Combines Predictions for Bayesian Model Averaging
coef: Estimated Coefficients and Confidence Intervals for Joint...
cvDCL: Dynamic Information
DerivIntSplines: Derivatives and Integrals of B-splines and Natural Cubic...
dynCJM: A Dynamic Discrimination Index for Joint Models
dynInfo: Dynamic Information of an Extra Longitudinal Measurement
fitted: Fitted Values and Residuals for Joint Models
gt: The Generalized Student's t Distribution
IndvPred: Individualized Predictions from Linear Mixed Models
JMbayes: Joint Modeling of Longitudinal and Time-to-Event Data in R...
JMbayesObject: Fitted JMbayes Object
jointModelBayes: Joint Models for Longitudinal and Time-to-Event Data
logLik: Log-Likelihood for Joint Models
marglogLik: Calculates Marginal Subject-specific Log-Likelihood...
pbc: Mayo Clinic Primary Biliary Cirrhosis Data
plot: MCMC Diagnostics for Joint Models
plot-survfitJM: Plot Method for survfit.JMbayes Objects
prederrJM: Prediction Errors for Joint Models
predict: Predictions for Joint Models
prothro: Prednisone versus Placebo in Liver Cirrhosis Patients
ranef: Random Effects Estimates for Joint Models
runDynPred: Shiny Application for Dynamic Predictions
survfitJM: Prediction in Joint Models
xtable: xtable Method from Joint Models.

Functions

IndvPred_lme Man page Source code
JMbayes Man page
JMbayes-package Man page
JMbayesObject Man page
MCMCfit Source code
ModelMats Source code
NextVisit Source code
S.b Source code
adjustKRW Source code
adjustScaleRW Source code
aids Man page
aids.id Man page
anova.JMbayes Man page Source code
aucJM Man page Source code
aucJM.JMbayes Man page Source code
aucJM.coxph Source code
bdiag Source code
blockUpdate Source code
bma.combine Man page Source code
cd Source code
cd.vec Source code
check_td Source code
chol.transf Source code
coef.JMbayes Man page Source code
coef.summary.JMbayes Source code
computeP Source code
confint.JMbayes Man page Source code
crLong Source code
cvDCL Man page Source code
dataLM Source code
dbs Man page Source code
dgbeta Source code
dgt Man page Source code
dmvnorm Source code
dmvt Source code
dns Man page Source code
draw.stick Source code
dropAttr Source code
dwish Source code
dynCJM Man page Source code
dynCJM.JMbayes Man page Source code
dynCJM.coxph Source code
dynInfo Man page Source code
effectiveSize Source code
extractInits Source code
extractPriors Source code
fastSumID Source code
fastSumID2 Source code
fd Source code
fd.vec Source code
find_positions Source code
fitted.JMbayes Man page Source code
fixNames Source code
fixef.JMbayes Man page Source code
format.perc Source code
format.pval2 Source code
gaussKronrod Source code
gaussLegendre Source code
hMats Source code
hessian.JMbayes Source code
ibs Man page Source code
initSurvival Source code
ins Man page Source code
jointModelBayes Man page Source code
log.posterior.b Source code
logLik.JMbayes Man page Source code
logh.b Source code
makepredictcall.dbs Source code
makepredictcall.dns Source code
makepredictcall.ibs Source code
makepredictcall.ins Source code
marglogLik Man page Source code
modes Source code
nearPD Source code
pbc2 Man page
pbc2.id Man page
pgt Man page Source code
plot.JMbayes Man page Source code
plot.rocJM Source code
plot.survfit.JMbayes Man page Source code
prederrJM Man page Source code
prederrJM.JMbayes Man page Source code
prederrJM.coxph Source code
predict.JMbayes Man page Source code
print.JMbayes Source code
print.aucJM Source code
print.dynCJM Source code
print.prederrJM Source code
print.rocJM Source code
print.summary.JMbayes Source code
print.survfit.JMbayes Source code
printCall Source code
prothro Man page
prothros Man page
qgt Man page Source code
ranef.JMbayes Man page Source code
residuals.JMbayes Man page Source code
rgt Man page Source code
rmvnorm Source code
rmvt Source code
rocJM Man page Source code
rocJM.JMbayes Man page Source code
rowMedians Source code
runDynPred Man page Source code
slice.shape Source code
slice.tau Source code
smilyface Source code
stdErr Source code
summary.JMbayes Source code
survPriors Source code
survfitJM Man page Source code
survfitJM.JMbayes Man page Source code
survivalFun Source code
trimAboveMean Source code
update.JMbayes Source code
vcov.JMbayes Source code
xtable.JMbayes Man page Source code

Files

inst
inst/CITATION
inst/NEWS
NAMESPACE
demo
demo/ui.R
demo/server.R
demo/00Index
demo/global.R
data
data/aids.id.rda
data/pbc2.id.rda
data/pbc2.rda
data/prothros.rda
data/aids.rda
data/prothro.rda
R
R/draw.stick.R
R/blockUpdate.R
R/slice.shape.R
R/summary.JMbayes.R
R/rocJM.R
R/plot.JMbayes.R
R/dynCJM.coxph.R
R/pgt.R
R/print.JMbayes.R
R/makepredictcall.dbs.R
R/fastSumID2.R
R/coef.JMbayes.R
R/trimAboveMean.R
R/fastSumID.R
R/print.dynCJM.R
R/S.b.R
R/hessian.JMbayes.R
R/logh.b.R
R/makepredictcall.ins.R
R/jointModelBayes.R
R/find_positions.R
R/survfitJM.JMbayes.R
R/dmvt.R
R/NextVisit.R
R/dynCJM.JMbayes.R
R/ModelMats.R
R/adjustScaleRW.R
R/print.survfit.JMbayes.R
R/survfitJM.R
R/aucJM.coxph.R
R/bma.combine.R
R/bdiag.R
R/plot.survfit.JMbayes.R
R/makepredictcall.dns.R
R/aucJM.JMbayes.R
R/check_td.R
R/rocJM.JMbayes.R
R/anova.JMbayes.R
R/prederrJM.coxph.R
R/rmvnorm.R
R/format.perc.R
R/survPriors.R
R/vcov.JMbayes.R
R/prederrJM.JMbayes.R
R/print.aucJM.R
R/gaussLegendre.R
R/globals.R
R/aucJM.R
R/stdErr.R
R/plot.rocJM.R
R/fixef.JMbayes.R
R/dynInfo.R
R/update.JMbayes.R
R/computeP.R
R/gaussKronrod.R
R/qgt.R
R/print.rocJM.R
R/extractPriors.R
R/dmvnorm.R
R/prederrJM.R
R/MCMCfit.R
R/printCall.R
R/adjustKRW.R
R/predict.JMbayes.R
R/fd.vec.R
R/fd.R
R/effectiveSize.R
R/initSurvival.R
R/logLik.JMbayes.R
R/extractInits.R
R/dataLM.R
R/rowMedians.R
R/ins.R
R/dgt.R
R/dynCJM.R
R/cvDCL.R
R/print.summary.JMbayes.R
R/marglogLik.R
R/chol.transf.R
R/modes.R
R/makepredictcall.ibs.R
R/log.posterior.b.R
R/smilyface.R
R/confint.JMbayes.R
R/nearPD.R
R/survivalFun.R
R/rgt.R
R/fixNames.R
R/print.prederrJM.R
R/fitted.JMbayes.R
R/cd.vec.R
R/dns.R
R/runDynPred.R
R/dynPred_lme.R
R/format.pval2.R
R/dwish.R
R/coef.summary.JMbayes.R
R/ibs.R
R/dgbeta.R
R/residuals.JMbayes.R
R/slice.tau.R
R/cd.R
R/xtable.JMbayes.R
R/hMats.R
R/crLong.R
R/dropAttr.R
R/ranef.JMbayes.R
R/rmvt.R
R/dbs.R
README.md
MD5
DESCRIPTION
man
man/anova.Rd
man/marglogLik.Rd
man/prothro.Rd
man/cvDCL.Rd
man/logLik.Rd
man/ranef.Rd
man/survfitJM.Rd
man/runDynPred.Rd
man/JMbayesObject.Rd
man/jointModelBayes.Rd
man/gt.Rd
man/aids.Rd
man/predict.Rd
man/DerivIntSplines.Rd
man/aucJM.Rd
man/plot-survfitJM.Rd
man/prederrJM.Rd
man/bma.combine.Rd
man/dynCJM.Rd
man/dynInfo.Rd
man/fitted.Rd
man/pbc.Rd
man/JMbayes.Rd
man/plot.Rd
man/xtable.Rd
man/coef.Rd
man/IndvPred.Rd
JMbayes documentation built on May 20, 2017, 4:22 a.m.