JMbayes: Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach

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Shared parameter models for the joint modeling of longitudinal and time-to-event data using MCMC.

Author
Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Date of publication
2016-08-25 09:59:07
Maintainer
Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
License
GPL (>= 2)
Version
0.8-0

View on CRAN

Man pages

aids
Didanosine versus Zalcitabine in HIV Patients
anova
Anova Method for Fitted Joint Models
aucJM
Time-Dependent ROCs and AUCs for Joint Models
bma.combine
Combines Predictions for Bayesian Model Averaging
coef
Estimated Coefficients and Confidence Intervals for Joint...
cvDCL
Dynamic Information
DerivIntSplines
Derivatives and Integrals of B-splines and Natural Cubic...
dynCJM
A Dynamic Discrimination Index for Joint Models
dynInfo
Dynamic Information of an Extra Longitudinal Measurement
fitted
Fitted Values and Residuals for Joint Models
gt
The Generalized Student's t Distribution
IndvPred
Individualized Predictions from Linear Mixed Models
JMbayes
Joint Modeling of Longitudinal and Time-to-Event Data in R...
JMbayesObject
Fitted JMbayes Object
jointModelBayes
Joint Models for Longitudinal and Time-to-Event Data
logLik
Log-Likelihood for Joint Models
marglogLik
Calculates Marginal Subject-specific Log-Likelihood...
pbc
Mayo Clinic Primary Biliary Cirrhosis Data
plot
MCMC Diagnostics for Joint Models
plot-survfitJM
Plot Method for survfit.JMbayes Objects
prederrJM
Prediction Errors for Joint Models
predict
Predictions for Joint Models
prothro
Prednisone versus Placebo in Liver Cirrhosis Patients
ranef
Random Effects Estimates for Joint Models
runDynPred
Shiny Application for Dynamic Predictions
survfitJM
Prediction in Joint Models
xtable
xtable Method from Joint Models.

Files in this package

JMbayes
JMbayes/inst
JMbayes/inst/CITATION
JMbayes/inst/NEWS
JMbayes/NAMESPACE
JMbayes/demo
JMbayes/demo/ui.R
JMbayes/demo/server.R
JMbayes/demo/00Index
JMbayes/demo/global.R
JMbayes/data
JMbayes/data/aids.id.rda
JMbayes/data/pbc2.id.rda
JMbayes/data/pbc2.rda
JMbayes/data/prothros.rda
JMbayes/data/aids.rda
JMbayes/data/prothro.rda
JMbayes/R
JMbayes/R/draw.stick.R
JMbayes/R/blockUpdate.R
JMbayes/R/slice.shape.R
JMbayes/R/summary.JMbayes.R
JMbayes/R/rocJM.R
JMbayes/R/plot.JMbayes.R
JMbayes/R/dynCJM.coxph.R
JMbayes/R/pgt.R
JMbayes/R/print.JMbayes.R
JMbayes/R/makepredictcall.dbs.R
JMbayes/R/fastSumID2.R
JMbayes/R/coef.JMbayes.R
JMbayes/R/trimAboveMean.R
JMbayes/R/fastSumID.R
JMbayes/R/print.dynCJM.R
JMbayes/R/S.b.R
JMbayes/R/hessian.JMbayes.R
JMbayes/R/logh.b.R
JMbayes/R/makepredictcall.ins.R
JMbayes/R/jointModelBayes.R
JMbayes/R/find_positions.R
JMbayes/R/survfitJM.JMbayes.R
JMbayes/R/dmvt.R
JMbayes/R/NextVisit.R
JMbayes/R/dynCJM.JMbayes.R
JMbayes/R/ModelMats.R
JMbayes/R/adjustScaleRW.R
JMbayes/R/print.survfit.JMbayes.R
JMbayes/R/survfitJM.R
JMbayes/R/aucJM.coxph.R
JMbayes/R/bma.combine.R
JMbayes/R/bdiag.R
JMbayes/R/plot.survfit.JMbayes.R
JMbayes/R/makepredictcall.dns.R
JMbayes/R/aucJM.JMbayes.R
JMbayes/R/check_td.R
JMbayes/R/rocJM.JMbayes.R
JMbayes/R/anova.JMbayes.R
JMbayes/R/prederrJM.coxph.R
JMbayes/R/rmvnorm.R
JMbayes/R/format.perc.R
JMbayes/R/survPriors.R
JMbayes/R/vcov.JMbayes.R
JMbayes/R/prederrJM.JMbayes.R
JMbayes/R/print.aucJM.R
JMbayes/R/gaussLegendre.R
JMbayes/R/globals.R
JMbayes/R/aucJM.R
JMbayes/R/stdErr.R
JMbayes/R/plot.rocJM.R
JMbayes/R/fixef.JMbayes.R
JMbayes/R/dynInfo.R
JMbayes/R/update.JMbayes.R
JMbayes/R/computeP.R
JMbayes/R/gaussKronrod.R
JMbayes/R/qgt.R
JMbayes/R/print.rocJM.R
JMbayes/R/extractPriors.R
JMbayes/R/dmvnorm.R
JMbayes/R/prederrJM.R
JMbayes/R/MCMCfit.R
JMbayes/R/printCall.R
JMbayes/R/adjustKRW.R
JMbayes/R/predict.JMbayes.R
JMbayes/R/fd.vec.R
JMbayes/R/fd.R
JMbayes/R/effectiveSize.R
JMbayes/R/initSurvival.R
JMbayes/R/logLik.JMbayes.R
JMbayes/R/extractInits.R
JMbayes/R/dataLM.R
JMbayes/R/rowMedians.R
JMbayes/R/ins.R
JMbayes/R/dgt.R
JMbayes/R/dynCJM.R
JMbayes/R/cvDCL.R
JMbayes/R/print.summary.JMbayes.R
JMbayes/R/marglogLik.R
JMbayes/R/chol.transf.R
JMbayes/R/modes.R
JMbayes/R/makepredictcall.ibs.R
JMbayes/R/log.posterior.b.R
JMbayes/R/smilyface.R
JMbayes/R/confint.JMbayes.R
JMbayes/R/nearPD.R
JMbayes/R/survivalFun.R
JMbayes/R/rgt.R
JMbayes/R/fixNames.R
JMbayes/R/print.prederrJM.R
JMbayes/R/fitted.JMbayes.R
JMbayes/R/cd.vec.R
JMbayes/R/dns.R
JMbayes/R/runDynPred.R
JMbayes/R/dynPred_lme.R
JMbayes/R/format.pval2.R
JMbayes/R/dwish.R
JMbayes/R/coef.summary.JMbayes.R
JMbayes/R/ibs.R
JMbayes/R/dgbeta.R
JMbayes/R/residuals.JMbayes.R
JMbayes/R/slice.tau.R
JMbayes/R/cd.R
JMbayes/R/xtable.JMbayes.R
JMbayes/R/hMats.R
JMbayes/R/crLong.R
JMbayes/R/dropAttr.R
JMbayes/R/ranef.JMbayes.R
JMbayes/R/rmvt.R
JMbayes/R/dbs.R
JMbayes/README.md
JMbayes/MD5
JMbayes/DESCRIPTION
JMbayes/man
JMbayes/man/anova.Rd
JMbayes/man/marglogLik.Rd
JMbayes/man/prothro.Rd
JMbayes/man/cvDCL.Rd
JMbayes/man/logLik.Rd
JMbayes/man/ranef.Rd
JMbayes/man/survfitJM.Rd
JMbayes/man/runDynPred.Rd
JMbayes/man/JMbayesObject.Rd
JMbayes/man/jointModelBayes.Rd
JMbayes/man/gt.Rd
JMbayes/man/aids.Rd
JMbayes/man/predict.Rd
JMbayes/man/DerivIntSplines.Rd
JMbayes/man/aucJM.Rd
JMbayes/man/plot-survfitJM.Rd
JMbayes/man/prederrJM.Rd
JMbayes/man/bma.combine.Rd
JMbayes/man/dynCJM.Rd
JMbayes/man/dynInfo.Rd
JMbayes/man/fitted.Rd
JMbayes/man/pbc.Rd
JMbayes/man/JMbayes.Rd
JMbayes/man/plot.Rd
JMbayes/man/xtable.Rd
JMbayes/man/coef.Rd
JMbayes/man/IndvPred.Rd