API for JointAI
Joint Analysis and Imputation of Incomplete Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| GR_crit | Man page Source code |
| JM_imp | Man page Source code |
| JointAI | Man page |
| JointAIObject | Man page |
| MC_error | Man page Source code |
| NHANES | Man page |
| PBC | Man page |
| Surv | Man page |
| add_dashes | Source code |
| add_linebreaks | Man page Source code |
| add_samples | Man page Source code |
| all_vars | Man page Source code |
| betamm_imp | Man page Source code |
| betareg_imp | Man page Source code |
| bs | Man page Source code |
| calc_lp | Source code |
| check_add_thinning | Source code |
| check_add_varnames | Source code |
| check_classes | Source code |
| check_cluster | Source code |
| check_data | Source code |
| check_fixed_random | Source code |
| check_formula_list | Man page Source code |
| check_full_blockdiag | Man page Source code |
| check_predprob | Source code |
| check_random_lvls | Source code |
| check_rd_vcov | Man page Source code |
| check_rd_vcov_list | Man page Source code |
| check_varlevel | Source code |
| check_vars_in_data | Source code |
| clean_names | Source code |
| clean_survname | Man page Source code |
| clm_imp | Man page Source code |
| clmm_imp | Man page Source code |
| clmm_in_jm | Source code |
| coef.JointAI | Man page Source code |
| coef.summary.JointAI | Source code |
| combine_formula_lists | Man page Source code |
| combine_formulas | Man page Source code |
| compare_modeltype | Source code |
| computeP | Source code |
| confint.JointAI | Man page Source code |
| convert_variables | Source code |
| coxph_imp | Man page Source code |
| cvapply | Source code |
| default_hyperpars | Man page Source code |
| densplot | Man page Source code |
| densplot.JointAI | Man page Source code |
| densplot.mcmc.list | Source code |
| difftime_df | Man page Source code |
| divide_matrices | Source code |
| drop_levels | Source code |
| duration_obj | Man page Source code |
| errormsg | Source code |
| expand_params | Source code |
| expand_ranefs | Source code |
| expand_rd_vcov_full | Man page Source code |
| extract_fcts | Source code |
| extract_id | Man page Source code |
| extract_lhs | Man page Source code |
| extract_outcome | Source code |
| extract_outcome_data | Source code |
| extract_state | Man page Source code |
| family.JointAI | Source code |
| fill_locf | Source code |
| find_dupl_parms | Source code |
| find_locf_cols | Source code |
| find_scalevars | Source code |
| fitted_values | Source code |
| format_Dmat | Source code |
| formula.JointAI | Source code |
| gauss_kronrod | Source code |
| get_1model_dim | Source code |
| get_D_names | Source code |
| get_Dmat | Source code |
| get_MIdat | Man page Source code |
| get_Mlist | Man page Source code |
| get_RinvD | Source code |
| get_assoc_type | Source code |
| get_coef_names | Source code |
| get_data_list | Source code |
| get_datlvls | Source code |
| get_diag_elmts | Source code |
| get_distr | Source code |
| get_dsgnmat_names | Source code |
| get_family | Man page Source code |
| get_fct_df_list | Source code |
| get_future_info | Source code |
| get_glm_modelname | Source code |
| get_groups | Source code |
| get_hc_columns | Source code |
| get_hc_info | Source code |
| get_index | Source code |
| get_indices | Source code |
| get_initial_values | Source code |
| get_intercepts | Source code |
| get_invD_indep | Source code |
| get_knots_h0 | Source code |
| get_link | Source code |
| get_linkfun | Source code |
| get_linkindent | Source code |
| get_linpreds | Source code |
| get_locf | Source code |
| get_lp | Source code |
| get_matgk | Source code |
| get_missinfo | Man page Source code |
| get_model1_info | Source code |
| get_model_dim | Source code |
| get_model_info | Source code |
| get_modelpars | Source code |
| get_models | Source code |
| get_modeltype | Man page Source code |
| get_nonprop_lp | Source code |
| get_nranef | Man page Source code |
| get_othervars_mat | Source code |
| get_params | Source code |
| get_parelmts | Source code |
| get_plotmain | Source code |
| get_predprob | Source code |
| get_priordistr | Source code |
| get_priortype | Source code |
| get_ranefpars | Source code |
| get_rds | Source code |
| get_rds_lp | Source code |
| get_rdvcov_names | Source code |
| get_rdvcov_scalemat | Source code |
| get_refs | Source code |
| get_repar | Source code |
| get_resp_mat | Man page Source code |
| get_rng | Source code |
| get_row | Source code |
| get_scale_pars | Source code |
| get_secndpar | Source code |
| get_subset | Source code |
| get_survinfo | Source code |
| get_terms_list | Source code |
| get_uptri_elmts | Source code |
| get_varlist | Source code |
| gkmodel_in_jm | Source code |
| glm_imp | Man page Source code |
| glme_imp | Man page Source code |
| glmer_imp | Man page |
| glmm_in_jm | Source code |
| hc_rdslope_info | Man page Source code |
| hc_rdslope_interact | Man page Source code |
| idSurv | Source code |
| identify_functions | Source code |
| identify_level_relations | Source code |
| idfun | Source code |
| ivapply | Source code |
| jagsmodel_clm | Source code |
| jagsmodel_clmm | Source code |
| jagsmodel_coxph | Source code |
| jagsmodel_glm | Source code |
| jagsmodel_glmm | Source code |
| jagsmodel_jm | Source code |
| jagsmodel_mlogit | Source code |
| jagsmodel_mlogitmm | Source code |
| jagsmodel_survreg | Source code |
| list_models | Man page Source code |
| lm_imp | Man page Source code |
| lme_imp | Man page Source code |
| lmer_imp | Man page |
| lognorm_imp | Man page Source code |
| lognormmm_imp | Man page Source code |
| longDF | Man page |
| lvapply | Source code |
| make_fct_df | Source code |
| make_filename | Source code |
| match_interaction | Source code |
| md_pattern | Man page Source code |
| melt_data.frame | Source code |
| melt_data.frame_list | Source code |
| melt_data_frame | Source code |
| melt_data_frame_list | Source code |
| melt_list | Source code |
| melt_matrix | Source code |
| melt_matrix_list | Source code |
| minmax | Source code |
| minmax_mat | Source code |
| mlogit_imp | Man page Source code |
| mlogitmm_imp | Man page Source code |
| model_imp | Man page Source code |
| model_matrix_combi | Source code |
| msg | Source code |
| nlapply | Source code |
| ns | Man page |
| nvapply | Source code |
| orga_hc_parelmts | Source code |
| outcomes_to_mat | Source code |
| parameters | Man page Source code |
| paste_and | Source code |
| paste_association | Source code |
| paste_coef | Man page Source code |
| paste_data | Man page Source code |
| paste_dummies | Source code |
| paste_interactions | Source code |
| paste_linpred | Man page Source code |
| paste_linpred_jm | Source code |
| paste_lp_ranef_part | Source code |
| paste_mu_b | Source code |
| paste_mu_b_full | Source code |
| paste_o | Source code |
| paste_obsvalue | Source code |
| paste_other | Source code |
| paste_p | Source code |
| paste_ps | Source code |
| paste_rdintercept_lp | Source code |
| paste_rdslope_lp | Source code |
| paste_regcoef_prior | Source code |
| paste_scale | Man page Source code |
| paste_scaling | Man page Source code |
| paste_trafos | Source code |
| paste_underlvalue | Source code |
| plot.JointAI | Man page Source code |
| plot.MCElist | Man page Source code |
| plot_all | Man page Source code |
| plot_imp_distr | Man page Source code |
| plot_prep | Source code |
| predDF | Man page Source code |
| predDF.JointAI | Man page Source code |
| predDF.formula | Man page Source code |
| predDF.list | Man page Source code |
| predict.JointAI | Man page Source code |
| predict_clm | Source code |
| predict_coxph | Source code |
| predict_glm | Source code |
| predict_jm | Source code |
| predict_mlogit | Source code |
| predict_survreg | Source code |
| prep_MCMC | Source code |
| prep_arglist | Source code |
| prep_covoutcomes | Source code |
| print.Dmat | Man page Source code |
| print.JointAI | Man page Source code |
| print.MCElist | Source code |
| print.modelstring | Source code |
| print.summary.JointAI | Man page Source code |
| print_output | Source code |
| print_refcat | Source code |
| print_seq | Source code |
| print_type | Source code |
| ranef_distr | Source code |
| ranef_priors | Source code |
| rbind_duration | Source code |
| rd_vcov | Man page Source code |
| rd_vcov_full | Source code |
| rd_vcov_indep | Source code |
| rd_vcov_univ | Source code |
| reformat_difftime | Man page Source code |
| reformat_longsurvdata | Source code |
| remove_grouping | Source code |
| remove_lhs | Man page Source code |
| replace_dummy | Source code |
| replace_interaction | Source code |
| replace_trafo | Source code |
| rescale | Source code |
| rescale_ranefs | Source code |
| rescale_ranefs_warning | Source code |
| rescale_rd_vcov | Source code |
| resid_clm | Source code |
| resid_coxph | Source code |
| resid_glm | Source code |
| resid_survreg | Source code |
| residuals.JointAI | Man page Source code |
| run_jags | Source code |
| run_parallel | Source code |
| run_seq | Source code |
| set0 | Source code |
| set0_list | Source code |
| set_refcat | Man page Source code |
| set_seed | Source code |
| sharedParams | Man page |
| simLong | Man page |
| simWide | Man page |
| split_formula | Man page Source code |
| split_formula_list | Man page Source code |
| split_outcome | Source code |
| sum_duration | Man page Source code |
| summary.JointAI | Man page Source code |
| survreg_imp | Man page Source code |
| tab | Source code |
| traceplot | Man page Source code |
| traceplot.JointAI | Man page Source code |
| traceplot.mcmc.list | Source code |
| warnmsg | Source code |
| wideDF | Man page |
| write_exp_lp | Source code |
| write_logits | Source code |
| write_model | Source code |
| write_nonprop | Source code |
| write_pgk | Source code |
| write_priors_clm | Source code |
| write_probs | Source code |
| write_psum_expit | Source code |
| write_ranefs | Source code |
