API for LBDiscover
Literature-Based Discovery Tools for Biomedical Research

Global functions
%||% Man page
.dict_cache_env Man page
.onAttach Source code
.onLoad Source code
.pubmed_cache_env Man page
`%||%` Source code
abc_model Man page Source code
abc_model_opt Man page Source code
abc_model_sig Man page Source code
abc_timeslice Man page Source code
add_statistical_significance Man page Source code
alternative_validation Man page Source code
anc_model Man page Source code
apply_bitola_flexible Man page Source code
apply_correction Man page Source code
authenticate_umls Man page Source code
bitola_model Man page Source code
calc_bibliometrics Man page Source code
calc_doc_sim Man page Source code
calculate_score Man page Source code
clear_pubmed_cache Man page Source code
cluster_docs Man page Source code
compare_terms Man page Source code
create_citation_net Man page Source code
create_comat Man page Source code
create_dummy_dictionary Man page Source code
create_report Man page Source code
create_sparse_comat Man page Source code
create_tdm Man page Source code
create_term_document_matrix Man page Source code
detect_lang Man page Source code
diversify_abc Man page Source code
diversify_b_terms Man page Source code
diversify_c_paths Man page Source code
enhance_abc_kb Man page Source code
eval_evidence Man page Source code
export_chord Man page Source code
export_chord_diagram Man page Source code
export_network Man page Source code
extract_entities Man page Source code
extract_entities_workflow Man page Source code
extract_mesh_from_text Man page Source code
extract_ner Man page Source code
extract_ngrams Man page Source code
extract_terms Man page Source code
extract_topics Man page Source code
fetch_and_parse_gene Man page Source code
fetch_and_parse_pmc Man page Source code
fetch_and_parse_protein Man page Source code
fetch_and_parse_pubmed Man page Source code
filter_by_type Man page Source code
filter_terms_for_abc_model Source code
find_abc_all Man page Source code
find_similar_docs Man page Source code
find_term Man page Source code
gen_report Man page Source code
get_dict_cache Man page Source code
get_pmc_fulltext Man page Source code
get_pubmed_cache Man page Source code
get_service_ticket Man page Source code
get_term_vars Man page Source code
get_type_dist Man page Source code
get_umls_semantic_types Man page Source code
is_valid_biomedical_entity Man page Source code
list_to_df Man page Source code
load_dictionary Man page Source code
load_from_mesh Man page Source code
load_from_umls Man page Source code
load_mesh_terms_from_pubmed Man page Source code
load_results Man page Source code
lsi_model Man page Source code
map_ontology Man page Source code
merge_entities Man page Source code
merge_results Man page Source code
min_results Man page Source code
ncbi_search Man page Source code
null_coalesce Man page
parallel_analysis Man page Source code
parse_pubmed_xml Man page Source code
perm_test_abc Man page Source code
plot_heatmap Man page Source code
plot_network Man page Source code
prep_articles Man page Source code
preprocess_text Man page Source code
process_mesh_chunks Man page Source code
process_mesh_xml Man page Source code
pubmed_search Man page Source code
query_external_api Man page Source code
query_mesh Man page Source code
query_umls Man page Source code
remove_ac_terms Man page Source code
retry_api_call Man page Source code
run_lbd Man page Source code
safe_diversify Man page Source code
sanitize_dictionary Man page Source code
save_results Man page Source code
search_umls_by_semantic_type Source code
segment_sentences Man page Source code
shadowtext Man page Source code Source code
standard_validation Man page Source code
valid_entities Man page Source code
validate_abc Man page Source code
validate_biomedical_entity Man page Source code
validate_entity_comprehensive Man page Source code
validate_entity_with_nlp Man page Source code
validate_umls_key Man page Source code
vec_preprocess Man page Source code Source code
vis_abc_heatmap Man page Source code
vis_abc_network Man page Source code
vis_heatmap Man page Source code
vis_network Man page Source code
visualize_abc_network Man page
LBDiscover documentation built on June 16, 2025, 5:09 p.m.