API for LBDiscover
Literature-Based Discovery Tools for Biomedical Research
| Global functions | |
|---|---|
| %||% | Man page |
| .dict_cache_env | Man page |
| .onAttach | Source code |
| .onLoad | Source code |
| .pubmed_cache_env | Man page |
| `%||%` | Source code |
| abc_model | Man page Source code |
| abc_model_opt | Man page Source code |
| abc_model_sig | Man page Source code |
| abc_timeslice | Man page Source code |
| add_statistical_significance | Man page Source code |
| alternative_validation | Man page Source code |
| anc_model | Man page Source code |
| apply_bitola_flexible | Man page Source code |
| apply_correction | Man page Source code |
| authenticate_umls | Man page Source code |
| bitola_model | Man page Source code |
| calc_bibliometrics | Man page Source code |
| calc_doc_sim | Man page Source code |
| calculate_score | Man page Source code |
| clear_pubmed_cache | Man page Source code |
| cluster_docs | Man page Source code |
| compare_terms | Man page Source code |
| create_citation_net | Man page Source code |
| create_comat | Man page Source code |
| create_dummy_dictionary | Man page Source code |
| create_report | Man page Source code |
| create_sparse_comat | Man page Source code |
| create_tdm | Man page Source code |
| create_term_document_matrix | Man page Source code |
| detect_lang | Man page Source code |
| diversify_abc | Man page Source code |
| diversify_b_terms | Man page Source code |
| diversify_c_paths | Man page Source code |
| enhance_abc_kb | Man page Source code |
| eval_evidence | Man page Source code |
| export_chord | Man page Source code |
| export_chord_diagram | Man page Source code |
| export_network | Man page Source code |
| extract_entities | Man page Source code |
| extract_entities_workflow | Man page Source code |
| extract_mesh_from_text | Man page Source code |
| extract_ner | Man page Source code |
| extract_ngrams | Man page Source code |
| extract_terms | Man page Source code |
| extract_topics | Man page Source code |
| fetch_and_parse_gene | Man page Source code |
| fetch_and_parse_pmc | Man page Source code |
| fetch_and_parse_protein | Man page Source code |
| fetch_and_parse_pubmed | Man page Source code |
| filter_by_type | Man page Source code |
| filter_terms_for_abc_model | Source code |
| find_abc_all | Man page Source code |
| find_similar_docs | Man page Source code |
| find_term | Man page Source code |
| gen_report | Man page Source code |
| get_dict_cache | Man page Source code |
| get_pmc_fulltext | Man page Source code |
| get_pubmed_cache | Man page Source code |
| get_service_ticket | Man page Source code |
| get_term_vars | Man page Source code |
| get_type_dist | Man page Source code |
| get_umls_semantic_types | Man page Source code |
| is_valid_biomedical_entity | Man page Source code |
| list_to_df | Man page Source code |
| load_dictionary | Man page Source code |
| load_from_mesh | Man page Source code |
| load_from_umls | Man page Source code |
| load_mesh_terms_from_pubmed | Man page Source code |
| load_results | Man page Source code |
| lsi_model | Man page Source code |
| map_ontology | Man page Source code |
| merge_entities | Man page Source code |
| merge_results | Man page Source code |
| min_results | Man page Source code |
| ncbi_search | Man page Source code |
| null_coalesce | Man page |
| parallel_analysis | Man page Source code |
| parse_pubmed_xml | Man page Source code |
| perm_test_abc | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_network | Man page Source code |
| prep_articles | Man page Source code |
| preprocess_text | Man page Source code |
| process_mesh_chunks | Man page Source code |
| process_mesh_xml | Man page Source code |
| pubmed_search | Man page Source code |
| query_external_api | Man page Source code |
| query_mesh | Man page Source code |
| query_umls | Man page Source code |
| remove_ac_terms | Man page Source code |
| retry_api_call | Man page Source code |
| run_lbd | Man page Source code |
| safe_diversify | Man page Source code |
| sanitize_dictionary | Man page Source code |
| save_results | Man page Source code |
| search_umls_by_semantic_type | Source code |
| segment_sentences | Man page Source code |
| shadowtext | Man page Source code Source code |
| standard_validation | Man page Source code |
| valid_entities | Man page Source code |
| validate_abc | Man page Source code |
| validate_biomedical_entity | Man page Source code |
| validate_entity_comprehensive | Man page Source code |
| validate_entity_with_nlp | Man page Source code |
| validate_umls_key | Man page Source code |
| vec_preprocess | Man page Source code Source code |
| vis_abc_heatmap | Man page Source code |
| vis_abc_network | Man page Source code |
| vis_heatmap | Man page Source code |
| vis_network | Man page Source code |
| visualize_abc_network | Man page |
