Files in LBDiscover

Literature-Based Discovery Tools for Biomedical Research

NEWS.md README.md R/performance_optimalization.R R/visualization.R R/abc_model.R R/text_preprocessing.R R/queries.R R/alternative_models.R R/clustering_similarity.R R/pubmed_search.R R/comprehensive_summary.R R/zzz.R R/globals.R R/heatmap_visualization.R R/utils.R inst/examples/document_similarity_example.R inst/examples/alternative_models_example.R inst/examples/migraine_example.R inst/examples/large_data_example.R tests/testthat.R tests/testthat/test-alternative_models.R tests/testthat/test-abc_model.R tests/testthat/test-report.R tests/testthat/test-queries.R tests/testthat/test-clustering_similarity.R tests/testthat/Rplots.pdf tests/testthat/test-heatmap.R tests/testthat/test-chord.R tests/testthat/test-visualization.R man/get_dict_cache.Rd man/dot-pubmed_cache_env.Rd man/standard_validation.Rd man/extract_entities.Rd man/vis_abc_heatmap.Rd man/extract_terms.Rd man/map_ontology.Rd man/validate_umls_key.Rd man/process_mesh_chunks.Rd man/list_to_df.Rd man/vec_preprocess.Rd man/abc_timeslice.Rd man/parse_pubmed_xml.Rd man/calc_bibliometrics.Rd man/validate_entity_comprehensive.Rd man/get_service_ticket.Rd man/ncbi_search.Rd man/perm_test_abc.Rd man/get_umls_semantic_types.Rd man/extract_topics.Rd man/query_umls.Rd man/sanitize_dictionary.Rd man/query_mesh.Rd man/extract_ngrams.Rd man/gen_report.Rd man/enhance_abc_kb.Rd man/filter_by_type.Rd man/add_statistical_significance.Rd man/validate_entity_with_nlp.Rd man/load_results.Rd man/clear_pubmed_cache.Rd man/bitola_model.Rd man/calc_doc_sim.Rd man/create_report.Rd man/apply_bitola_flexible.Rd man/min_results.Rd man/run_lbd.Rd man/get_pubmed_cache.Rd man/diversify_c_paths.Rd man/diversify_b_terms.Rd man/plot_heatmap.Rd man/create_dummy_dictionary.Rd man/load_mesh_terms_from_pubmed.Rd man/valid_entities.Rd man/fetch_and_parse_pmc.Rd man/null_coalesce.Rd man/extract_entities_workflow.Rd man/shadowtext.Rd man/find_similar_docs.Rd man/vis_heatmap.Rd man/diversify_abc.Rd man/create_sparse_comat.Rd man/load_from_umls.Rd man/fetch_and_parse_pubmed.Rd man/detect_lang.Rd man/visualize_abc_network.Rd man/cluster_docs.Rd man/export_chord_diagram.Rd man/pubmed_search.Rd man/vis_network.Rd man/save_results.Rd man/plot_network.Rd man/find_term.Rd man/calculate_score.Rd man/create_tdm.Rd man/segment_sentences.Rd man/remove_ac_terms.Rd man/fetch_and_parse_protein.Rd man/create_term_document_matrix.Rd man/alternative_validation.Rd man/load_dictionary.Rd man/authenticate_umls.Rd man/find_abc_all.Rd man/merge_results.Rd man/compare_terms.Rd man/load_from_mesh.Rd man/get_pmc_fulltext.Rd man/export_network.Rd man/prep_articles.Rd man/abc_model_opt.Rd man/create_citation_net.Rd man/validate_biomedical_entity.Rd man/fetch_and_parse_gene.Rd man/extract_ner.Rd man/validate_abc.Rd man/is_valid_biomedical_entity.Rd man/safe_diversify.Rd man/export_chord.Rd man/apply_correction.Rd man/create_comat.Rd man/get_term_vars.Rd man/abc_model.Rd man/parallel_analysis.Rd man/lsi_model.Rd man/retry_api_call.Rd man/query_external_api.Rd man/merge_entities.Rd man/process_mesh_xml.Rd man/eval_evidence.Rd man/dot-dict_cache_env.Rd man/get_type_dist.Rd man/extract_mesh_from_text.Rd man/anc_model.Rd man/abc_model_sig.Rd man/preprocess_text.Rd