Files in LEANR

Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes

MD5

DESCRIPTION

README.md

NAMESPACE

inst/doc/subnet-sim.html

inst/doc/CCM-data.R inst/doc/subnet-sim.R inst/doc/CCM-data.Rmd inst/doc/subnet-sim.Rmd

inst/doc/CCM-data.html

inst/extdata/pvals_red.txt.gz

inst/extdata/g_red.sif.gz

inst/extdata/input_pvals_CCM2.txt.gz

inst/extdata/STRING_Mouse_fs900.sif.gz

inst/extdata/gene.annots.txt.gz

vignettes/CCM-data.Rmd vignettes/subnet-sim.Rmd R/leanr_method.R

R/sysdata.rda

man/run.lean.Rd man/g2.Rd man/CCM.pvals.Rd man/get.ls.info.Rd man/LEANR-package.Rd man/pvals_red.Rd man/gene.list.scores.Rd man/subnet.simulation.Rd man/g_red.Rd man/gene.annots.Rd man/write.ls.to.sif.Rd

build/vignette.rds

tests/testthat.R tests/testthat/test_output.R tests/testthat/test_graphmod.params.R

data/g2.rda

data/gene.annots.rda

data/pvals_red.rda

data/g_red.rda

data/gene.list.scores.rda

data/datalist

data/CCM.pvals.rda

LEANR documentation built on May 2, 2019, 3:46 p.m.