write.ls.to.sif: Extract the "local subnetwork" around a given protein

Description Usage Arguments Author(s) See Also

View source: R/leanr_method.R

Description

Extract the "local subnetwork" around a given protein and write it to a Cytoscape-readable .sif file

Usage

1
write.ls.to.sif(prot_id, LEANres, outfile)

Arguments

prot_id

protein id compatible with node names used in graph g

LEANres

LEAN result object (list) returned by <run.lean> or <run.lean.fromdata>

outfile

character string describing the location of an output file. Should end in .sif to be able to load it in Cytoscape.

Author(s)

Frederik Gwinner

See Also

run.lean


LEANR documentation built on May 30, 2017, 7:52 a.m.