Extract the "local subnetwork" around a given protein

Description

Extract the "local subnetwork" around a given protein and write it to a Cytoscape-readable .sif file

Usage

1
write.ls.to.sif(prot_id, LEANres, outfile)

Arguments

prot_id

protein id compatible with node names used in graph g

LEANres

LEAN result object (list) returned by <run.lean> or <run.lean.fromdata>

outfile

character string describing the location of an output file. Should end in .sif to be able to load it in Cytoscape.

Author(s)

Frederik Gwinner

See Also

run.lean