write.ls.to.sif: Extract the "local subnetwork" around a given protein
In LEANR: Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes
Description
Usage
Arguments
Author(s)
See Also
Description
Extract the "local subnetwork" around a given protein and write it to a Cytoscape-readable .sif file
Usage
1
write.ls.to.sif(prot_id, LEANres, outfile)
Arguments
prot_id
protein id compatible with node names used in graph g
LEANres
LEAN result object (list) returned by <run.lean> or <run.lean.fromdata>
outfile
character string describing the location of an output file. Should end in .sif to be able to load it in Cytoscape.
Author(s)
Frederik Gwinner
See Also
LEANR documentation built on May 2, 2019, 3:46 p.m.
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Description Usage Arguments Author(s) See Also
Description
Extract the "local subnetwork" around a given protein and write it to a Cytoscape-readable .sif file
Usage
1 | write.ls.to.sif(prot_id, LEANres, outfile)
|
Arguments
prot_id |
protein id compatible with node names used in graph |
LEANres |
LEAN result object (list) returned by <run.lean> or <run.lean.fromdata> |
outfile |
character string describing the location of an output file. Should end in .sif to be able to load it in Cytoscape. |
Author(s)
Frederik Gwinner
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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