Man pages for LEGIT
Latent Environmental & Genetic InTeraction (LEGIT) Model

backward_stepInternal function that does the backward step for the...
backward_step_IMInternal function that does the backward step for the...
best_modelBest model
best_model.elastic_net_var_selectBest model from elastic net variable selection
bootstrap_var_selectBootstrap variable selection (for IMLEGIT)
elastic_net_var_selectElastic net for variable selection in IMLEGIT model
example_2waySimulated example of a 2 way interaction GxE model.
example_3waySimulated example of a 3 way interaction GxExz model
example_3way_3latentSimulated example of a 3 way interaction GxExZ model
example_with_crossoverSimulated example of a 2 way interaction GxE model with...
forward_stepInternal function that does the forward step for the stepwise...
forward_step_IMInternal function that does the forward step for the stepwise...
genetic_var_selectParallel genetic algorithm variable selection (for IMLEGIT)
GxE_interaction_RoSRegions of significance using Johnson-Neyman technique
GxE_interaction_testTesting of the GxE interaction
IMLEGITIndependent Multiple Latent Environmental & Genetic...
IMLEGIT_cvCross-validation for the IMLEGIT model
IMLEGIT_netIndependent Multiple Latent Environmental & Genetic...
IMLEGIT_to_LEGITIMLEGIT to LEGIT
LEGITLatent Environmental & Genetic InTeraction (LEGIT) model
LEGIT_cvCross-validation for the LEGIT model
LEGIT_to_IMLEGITLEGIT to IMLEGIT
longitudinal_foldsLongitudinal folds
nes_var_selectParallel natural evolutionary variable selection assuming...
plot.elastic_net_var_selectPlot function for the output of elastic_net_var_select
plot.LEGITPlot
predict.IMLEGITPredictions of IMLEGIT fits
predict.LEGITPredictions of LEGIT fits
r1nes_var_selectParallel natural evolutionary variable selection assuming...
rGEGene-Environment correlation estimation and testing
rGE.IMLEGITGene-Environment correlation estimation and testing of...
rGE.LEGITGene-Environment correlation estimation and testing of LEGIT...
stepwise_searchStepwise search for the best subset of genetic variants or...
stepwise_search_IMStepwise search for the best subset of elements in the latent...
summary.elastic_net_var_selectSummary function for the output of elastic_net_var_select
summary.IMLEGITSummarizing IMLEGIT fits
summary.LEGITSummarizing LEGIT fits
LEGIT documentation built on Aug. 30, 2019, 1:05 a.m.