LFDREmpiricalBayes: Estimating Local False Discovery Rates Using Empirical Bayes Methods

New empirical Bayes methods aiming at analyzing the association of single nucleotide polymorphisms (SNPs) to some particular disease are implemented in this package. The package uses local false discovery rate (LFDR) estimates of SNPs within a sample population defined as a "reference class" and discovers if SNPs are associated with the corresponding disease. Although SNPs are used throughout this document, other biological data such as protein data and other gene data can be used. Karimnezhad, Ali and Bickel, D. R. (2016) <http://hdl.handle.net/10393/34889>.

Package details

AuthorAli Karimnezhad, Johnary Kim, Anna Akpawu, Justin Chitpin and David R Bickel
Bioconductor views Bayesian MathematicalBiology MultipleComparison
MaintainerAli Karimnezhad <[email protected]>
LicenseGPL-3
Version1.0
URL https://davidbickel.com
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("LFDREmpiricalBayes")

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LFDREmpiricalBayes documentation built on Sept. 27, 2017, 5:04 p.m.