Predict oligomerization state of coiled-coil sequences.

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Description

Functions for predicting the oligomeric state of user-defined coiled-coil sequencse. Those functions allow the user to separate between antiparallel dimer, parallel dimers, trimers and higher-order coiled coils.

Details

Package: LOGICOIL
Type: Package
Version: 1.0
Date: 2014-04-12
License: What license is it under?

Functions in the LOGICOIL package allow users to apply the LOGICOIL prediction algorithm to predict the oligomeric state of coiled-coil sequences.

Author(s)

Thomas L. Vincent tlfvincent@gmail.com

References

Thomas L. Vincent, Peter J. Green and Dek N. Woolfson. "LOGICOIL-multi-state prediction of coiled-coil oligomeric state", 29(1), pp69-76, Bioinformatics, (2013). DOI: 10.1093/bioinformatics/bts648

Examples

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library(nnet)
data(pssm)
data(Model_Parameters)
data(LOGICOILfit)

score <- LOGICOIL("GCN4wt", "MKQLEDKVEELLSKNYHLENEVARLKKLV", 
    "abcdefgabcdefgabcdefgabcdefga", plot.result=TRUE)

# print output
print(score)