Description Details Author(s) References Examples
Functions for predicting the oligomeric state of user-defined coiled-coil sequencse. Those functions allow the user to separate between antiparallel dimer, parallel dimers, trimers and higher-order coiled coils.
Package: | LOGICOIL |
Type: | Package |
Version: | 1.0 |
Date: | 2014-04-12 |
License: | What license is it under? |
Functions in the LOGICOIL package allow users to apply the LOGICOIL prediction algorithm to predict the oligomeric state of coiled-coil sequences.
Thomas L. Vincent tlfvincent@gmail.com
Thomas L. Vincent, Peter J. Green and Dek N. Woolfson. "LOGICOIL-multi-state prediction of coiled-coil oligomeric state", 29(1), pp69-76, Bioinformatics, (2013). DOI: 10.1093/bioinformatics/bts648
1 2 3 4 5 6 7 8 9 10 | library(nnet)
data(pssm)
data(Model_Parameters)
data(LOGICOILfit)
score <- LOGICOIL("GCN4wt", "MKQLEDKVEELLSKNYHLENEVARLKKLV",
"abcdefgabcdefgabcdefgabcdefga", plot.result=TRUE)
# print output
print(score)
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