Description Usage Format Source References Examples

A list containing five elements, each of which are required to run the LOGICOIL prediction algorithm.

1 |

A list containing five elements, which are required to run the LOGICOIL model:

amino: a character vector containing allowed amino-acids.

register: a character vector containing allowed register assignments.

amino_interactions: a 87 x 2 matrix containing all amino-amino interactions considered in the LOGICOIL model.

register_interactions: a 87 x 2 matrix containing the matching register positions of the amino-amino interactions.

lag_matrix: a 7 x 7 matrix that gives the positional lag between register positions.

DOI: 10.1093/bioinformatics/bts648

Thomas L. Vincent, Peter J. Green and Dek N. Woolfson. "LOGICOIL-multi-state prediction of coiled-coil oligomeric state", 29(1), pp69-76, Bioinformatics, (2013). DOI: 10.1093/bioinformatics/bts648

1 2 3 4 5 6 7 8 9 | ```
data(Model_Parameters)
names(Model_Parameters)
# Optional to run
# summary(Model_Parameters$amino)
# summary(Model_Parameters$register)
# head(Model_Parameters$amino_interactions, 5)
# head(Model_Parameters$register_interactions, 5)
# Model_Parameters$lag_matrix
``` |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.