API for LUCIDus
LUCID with Multiple Omics Data
| Global functions | |
|---|---|
| .lucid_check_and_stabilize_sigma | Source code |
| .lucid_safe_log_sum_exp | Source code |
| .lucid_safe_normalize | Source code |
| .lucid_safe_solve | Source code |
| Estep | Source code |
| Estep_early | Source code |
| Estep_early_g | Source code |
| Estep_g | Source code |
| Estep_to_r | Source code |
| Istep_Z | Man page Source code |
| LogSumExp | Source code |
| Mstep_G | Source code |
| Mstep_GtoX | Source code |
| Mstep_XtoY | Source code |
| Mstep_XtoZ | Source code |
| Mstep_Z | Source code |
| `%||%` | Source code |
| align_boot_vector | Source code |
| analyze_missing_pattern | Man page Source code |
| binary | Source code |
| boot_lucid | Man page Source code |
| build_serial_transition_labels_boot | Source code |
| cal_bic_parallel | Source code |
| cal_bic_serial | Source code |
| cal_loglik | Source code |
| cal_loglik_serial | Source code |
| check_K | Source code |
| check_and_stabilize_sigma | Man page Source code Source code |
| check_convergence | Man page Source code |
| check_imputation_quality | Man page Source code |
| check_na | Man page Source code |
| compute_res_r | Source code |
| early_estep | Source code |
| est_mu | Source code |
| estimate_lucid | Man page Source code |
| extract_early_stage_vector | Source code |
| extract_parallel_boot_vector | Source code |
| extract_parallel_gamma | Source code |
| extract_parallel_stage_vector | Source code |
| extract_serial_boot_template | Source code |
| f.binary.early | Source code |
| f.normal.early | Source code |
| f_GtoX | Source code |
| f_XtoY | Source code |
| f_XtoZ | Source code |
| fill_data | Man page Source code |
| fill_data_help1 | Source code |
| fill_data_help2 | Source code |
| fill_data_lod | Source code |
| flatten_serial_Z | Source code |
| gen_ci | Man page Source code |
| gen_cov_matrices | Source code |
| get_model_rho_values | Source code |
| get_ref_cluster | Source code |
| has_unselected_feature | Source code |
| has_unselected_feature_serial | Source code |
| indicator | Source code |
| initialize_Beta | Source code |
| initialize_Delta | Source code |
| initialize_Mu | Source code |
| initialize_Mu_Sigma | Source code |
| initialize_Sigma | Source code |
| is_binary_family | Source code |
| is_normal_family | Source code |
| is_positive_definite | Source code |
| lastInd | Source code |
| lse_vec | Source code |
| lucid | Man page Source code |
| lucid_par_early | Source code |
| lucid_par_parallel | Source code |
| lucid_par_serial | Source code |
| make_positive_definite | Source code |
| normal | Source code |
| normalize_bootstrap_model | Source code |
| normalize_family_label | Source code |
| normalize_parallel_beta | Source code |
| normalize_parallel_mu | Source code |
| plot | Man page Source code |
| plot.early_lucid | Source code |
| plot.lucid_parallel | Source code |
| plot.lucid_serial | Source code |
| pred_lucid | Source code |
| predict_lucid | Man page Source code |
| print.auxi.serial.scen1 | Source code |
| print.auxi.serial.scen2 | Source code |
| print.auxi.serial.scen3 | Source code |
| print.sumlucid_auxi | Source code |
| print.sumlucid_early | Man page Source code |
| print.sumlucid_parallel | Man page Source code |
| print.sumlucid_serial | Man page Source code |
| refit_bootstrap_zero_penalty | Source code |
| reorder_Beta | Source code |
| reorder_Delta | Source code |
| reorder_Mu_Sigma | Source code |
| reorder_lucid | Source code |
| reorder_z | Source code |
| restore_serial_Z_from_data | Source code |
| safe_impute | Man page Source code |
| safe_log | Source code |
| safe_log_sum_exp | Man page Source code Source code Source code |
| safe_normalize | Man page Source code Source code |
| safe_solve | Man page Source code Source code Source code |
| sim_data | Man page |
| simulated_HELIX_data | Man page |
| split_serial_boot_ci | Source code |
| summarize_missing_stats | Man page Source code |
| summary.early_lucid | Man page Source code |
| summary.lucid_parallel | Man page Source code |
| summary.lucid_serial | Man page Source code |
| summary_lucid | Man page Source code |
| summary_lucid_auxi | Source code |
| summary_lucid_simple | Source code |
| to_parallel_family | Source code |
| tune_lucid | Man page |
| vec_to_array | Source code |
