Man pages for LUCIDus
LUCID with Multiple Omics Data
| analyze_missing_pattern | Describe the missing-data pattern of an omics matrix |
| boot_lucid | Inference of LUCID model based on bootstrap resampling |
| check_imputation_quality | Check whether imputed values are distributionally plausible |
| check_na | Classify each subject's omics missingness pattern |
| estimate_lucid | Fit LUCID models with one or multiple omics layers |
| get_cluster_assignment | Extract the hard cluster assignment from a fitted LUCID model |
| get_selected_G | Extract selected (retained) exposures from a fitted LUCID... |
| get_selected_Z | Extract selected (retained) omics features from a fitted... |
| get_top_omics_features | Extract the top-N most important omics features from a fitted... |
| lucid | Fit a lucid model for integrated analysis on exposure,... |
| plot_cluster_omic_profile | Plot per-cluster omics profiles |
| plot.early_lucid | Visualize an early-integration LUCID model through a Sankey... |
| plot.lucid_parallel | Sankey diagram for a parallel-integration LUCID model (not... |
| plot.lucid_serial | Sankey diagram for a serial-integration LUCID model (not yet... |
| predict_lucid | Predict Cluster Assignment and Outcome From a Fitted LUCID... |
| print.sumlucid_early | Print the output of LUCID in a nicer table |
| print.sumlucid_parallel | Print the output of LUCID in a nicer table |
| print.sumlucid_serial | Print the output of LUCID in a nicer table |
| safe_impute | Single-value imputation that tolerates fully missing columns |
| sim_data | A simulated dataset for LUCID |
| simulated_HELIX_data | A simulated HELIX dataset for LUCID |
| summary_lucid | Summarize results of the early LUCID model |
| summary.lucid_parallel | Summarize results of the parallel LUCID model |
| summary.lucid_serial | Summarize results of the serial LUCID model |
| tune_lucid | Wrapper for LUCID Model and Penalty Tuning |
