Files in LUCIDus

LUCID with Multiple Omics Data

MD5

NEWS.md

NAMESPACE

DESCRIPTION

LICENSE

R/missing_data_em.R R/estimate_lucid.R R/summary.R R/model_extractors.R R/input_validation.R R/stability_utils.R R/data.R R/lucid.R R/early_integration_family.R R/plot_cluster_omic_profile.R R/tune_lucid.R R/g_computation_utility.R R/parallel_mstep.R R/outcome_utils.R R/early_integration_em.R R/predict_lucid.R R/em_utils.R R/plot_lucid.R R/boot_lucid.R R/density_helpers.R R/parallel_estep.R R/missing_data_diagnostics.R inst/doc/lucid_3models_normal_outcome.R inst/doc/serial_6stage_parallel_monotone_missing_tutorial.R inst/doc/serial_6stage_parallel_monotone_missing_tutorial.Rmd

inst/doc/lucid_3models_normal_outcome.html

inst/doc/lucid_3models_binary_outcome.html

inst/doc/lucid_3models_binary_outcome.Rmd inst/doc/lucid_early_sankey_top_omics_tutorial.R inst/doc/lucidus_full_functionality_guide.Rmd inst/doc/lucid_3models_normal_outcome.Rmd inst/doc/lucidus_full_functionality_guide.R inst/doc/lucid_3models_binary_outcome.R inst/doc/lucid_early_sankey_top_omics_tutorial.Rmd

inst/doc/serial_6stage_parallel_monotone_missing_tutorial.html

inst/doc/lucid_early_sankey_top_omics_tutorial.html

inst/doc/lucidus_full_functionality_guide.html

build/vignette.rds

tests/testthat.R tests/testthat/test-check-K-validation.R tests/testthat/test-predict_normal_1_layer.R tests/testthat/test-grid-fit-sanity.R tests/testthat/test-tune-Serial-binary.R tests/testthat/test-summary-missing-profile.R tests/testthat/test-summary-significance-stars.R tests/testthat/test-serial-6stage-parallel-smoke.R tests/testthat/test-plot-cluster-omic-profile.R tests/testthat/test-boot-lucid-serial.R tests/testthat/test-predict-serial-binary-5-layers.R tests/testthat/test-gcomp-early-parallel-contract.R tests/testthat/helper-sim.R tests/testthat/test-Serial-binary-missing.R tests/testthat/test-parallel-tuning-penalty-grid.R tests/testthat/test-summart-binary-5-layers.R tests/testthat/test-grid-missingness-invariants.R tests/testthat/test-gcomp-binary-1-layer.R tests/testthat/test-correctness-boot-align.R tests/testthat/test-Serial-binary-summary.R tests/testthat/test-predict-binary-5-layers.R tests/testthat/test-tune-normal-2-layers.R tests/testthat/test-paper-simulation-recovery.R tests/testthat/test-rho-g-exposure-only-consistency.R tests/testthat/test-summary-normal-5-layers.R tests/testthat/test-boot-lucid-early.R tests/testthat/test-predict-argument-modes.R tests/testthat/test-paper-equations-oracle.R tests/testthat/test-defect-regressions.R tests/testthat/test-accuracy-selection.R tests/testthat/test-em-restart-guard.R tests/testthat/test-missing-normal-1-layers.R tests/testthat/test-predict-normal-5-layers.R tests/testthat/test-paper-outcome-mstep.R tests/testthat/test-lucid-normal-3-layers.R tests/testthat/test-accuracy-imputation.R tests/testthat/test-invalid-input.R tests/testthat/test-predict-binary-1-layer.R tests/testthat/test-serial-fit-missing-robustness.R tests/testthat/test-predict-binary-3-layers.R tests/testthat/test-parallel-p0-regressions.R tests/testthat/test-missing-data-mechanism.R tests/testthat/test-tune-binary-2-layers.R tests/testthat/test-serial-summary-context-labels.R tests/testthat/test-accuracy-ci-coverage.R tests/testthat/test-parallel-selection-impute.R tests/testthat/test-predict-serial-normal-5-layers.R tests/testthat/test-lucid-binary-5-layers.R tests/testthat/test-paper-likelihood-bic.R tests/testthat/test-label-switching.R tests/testthat/test-summary-output-correctness.R tests/testthat/test-lucid-normal-1-layer.R tests/testthat/test-missing-binary-5-layers.R tests/testthat/test-outcome-integration-regressions.R tests/testthat/test-plot-profile-generalizability.R tests/testthat/test-g_comp-binary-3-layers.R tests/testthat/test-defect-init-model-null.R tests/testthat/test-verbose-fit-logging.R tests/testthat/test-paper-parallel-arbitrary-layers.R tests/testthat/test-parallel-p1-plumbing.R tests/testthat/test-missing-binary-1-layer.R tests/testthat/test-early-robustness.R tests/testthat/test-gcomp-serial-normal-5-layers.R tests/testthat/test-Serial-normal-missing.R tests/testthat/test-boot-lucid-parallel.R tests/testthat/test-outcome-parameterization.R tests/testthat/test-serial-em-control.R tests/testthat/test-model-extractors.R tests/testthat/test-plot_lucid_1_layer.R tests/testthat/test-lucid-model-default.R tests/testthat/test-missing-normal-3-layers.R tests/testthat/helper-oracle.R tests/testthat/test-lucid-binary-3-layers.R tests/testthat/test-tune-penalty-fail-guard.R tests/testthat/test-grid-predict-modes.R tests/testthat/test-accuracy-recovery.R tests/testthat/test-parallel-robustness-extra.R tests/testthat/test-paper-missing-equation17.R tests/testthat/test-tuning-verbose.R tests/testthat/test-tune-lucid-serial-robustness.R tests/testthat/test-convergence-monotonicity.R tests/testthat/test-serial-summary-shape.R tests/testthat/test-lucid-normal-5-layers.R tests/testthat/test-lucid-binary-1-layer.R tests/testthat/test-serial-reproducibility.R tests/testthat/test-boot-lucid-qc.R tests/testthat/test-extreme-edge-cases.R tests/testthat/test-workhorse-p0-p1-regressions.R tests/testthat/test-tune-Serial-normal.R tests/testthat/test-serial-select-and-likelihood.R vignettes/serial_6stage_parallel_monotone_missing_tutorial.Rmd vignettes/lucid_3models_binary_outcome.Rmd vignettes/lucidus_full_functionality_guide.Rmd vignettes/lucid_3models_normal_outcome.Rmd vignettes/lucid_early_sankey_top_omics_tutorial.Rmd

data/simulated_HELIX_data.rda

data/sim_data.rda

man/summary.lucid_parallel.Rd man/plot.lucid_serial.Rd man/analyze_missing_pattern.Rd man/plot_cluster_omic_profile.Rd man/boot_lucid.Rd man/get_top_omics_features.Rd man/get_selected_Z.Rd man/plot.early_lucid.Rd man/safe_impute.Rd man/summary_lucid.Rd man/predict_lucid.Rd man/print.sumlucid_early.Rd man/print.sumlucid_parallel.Rd man/simulated_HELIX_data.Rd man/get_selected_G.Rd man/estimate_lucid.Rd man/check_na.Rd man/check_imputation_quality.Rd man/get_cluster_assignment.Rd man/print.sumlucid_serial.Rd man/plot.lucid_parallel.Rd man/sim_data.Rd man/lucid.Rd man/summary.lucid_serial.Rd man/tune_lucid.Rd

man/figures/README-profile-1.png

LUCIDus documentation built on Sept. 3, 2026, 1:06 a.m.