getInclusionList: Obtain an inclusion list from the annotation results
In LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data
View source: R/additionalFunctions.R
getInclusionList R Documentation
Obtain an inclusion list from the annotation results
Description
Obtain an inclusion list for the identified lipids.
Usage
getInclusionList(df, dbs)
Arguments
df
data frame. Output of identification functions (results table from
an msobject or feature table from an msbatch).
dbs
list of data bases required for annotation. By default, dbs
contains the required data frames based on the default fragmentation rules.
If these rules are modified, dbs may need to be supplied. See createLipidDB
and assignDB.
Value
Data frame with 6 columns: formula, RT, neutral mass, m/z, adduct
and the LipidMSid.
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
LipidMS documentation built on May 29, 2024, 11:24 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/additionalFunctions.R
| getInclusionList | R Documentation |
Obtain an inclusion list from the annotation results
Description
Obtain an inclusion list for the identified lipids.
Usage
getInclusionList(df, dbs)
Arguments
df |
data frame. Output of identification functions (results table from an msobject or feature table from an msbatch). |
dbs |
list of data bases required for annotation. By default, dbs contains the required data frames based on the default fragmentation rules. If these rules are modified, dbs may need to be supplied. See createLipidDB and assignDB. |
Value
Data frame with 6 columns: formula, RT, neutral mass, m/z, adduct and the LipidMSid.
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.