plotLipids: Plot informative peaks for lipid annotation
In LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data
View source: R/additionalFunctions.R
plotLipids R Documentation
Plot informative peaks for lipid annotation
Description
Plot informative peaks for each lipid annotated with idPOS and idNEG (or
similar functions).
Usage
plotLipids(msobject, span = 0.4, ppm = 10, verbose = TRUE)
Arguments
msobject
annotated msobject.
span
smoothing parameter. Numeric value between 0 and 1.
ppm
mz tolerance for EIC. If set to 0, the EIC will not be shown.
verbose
print information messages.
Details
Peak intensities are relative to the maximum intensity of each peak
to ease visualization.
Grey lines show the the extracted ion chromatograms for the peaks.
Value
msobject with a plots element which contains a list of plots.
Plots on the left side represent raw values while plots on the left are
smoothed or clean scans (MS2 in DDA).
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
LipidMS documentation built on May 29, 2024, 11:24 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/additionalFunctions.R
| plotLipids | R Documentation |
Plot informative peaks for lipid annotation
Description
Plot informative peaks for each lipid annotated with idPOS and idNEG (or similar functions).
Usage
plotLipids(msobject, span = 0.4, ppm = 10, verbose = TRUE)
Arguments
msobject |
annotated msobject. |
span |
smoothing parameter. Numeric value between 0 and 1. |
ppm |
mz tolerance for EIC. If set to 0, the EIC will not be shown. |
verbose |
print information messages. |
Details
Peak intensities are relative to the maximum intensity of each peak to ease visualization.
Grey lines show the the extracted ion chromatograms for the peaks.
Value
msobject with a plots element which contains a list of plots. Plots on the left side represent raw values while plots on the left are smoothed or clean scans (MS2 in DDA).
Author(s)
M Isabel Alcoriza-Balaguer <maribel_alcoriza@iislafe.es>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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