Files in LocaTT
Geographically-Conscious Taxonomic Assignment for Metabarcoding
MD5
README.md
NAMESPACE
DESCRIPTION
R/blast_version.R
R/trim_sequences.R
R/write.fastq.R
R/get_taxonomies.species_binomials.R
R/contains_wildcards.R
R/get_taxonomies.IUCN.R
R/isolate_amplicon.R
R/decode_quality_scores.R
R/reverse_complement.R
R/format_reference_database.R
R/merge_pairs.R
R/read.fastq.R
R/truncate_sequences.probability.R
R/truncate_sequences.length.R
R/truncate_sequences.quality_score.R
R/write.fasta.R
R/blast_command_found.R
R/get_consensus_taxonomy.R
R/zzz.R
R/local_taxa_tool.R
R/binomial_test.R
R/substitute_wildcards.R
R/read.fasta.R
R/get_taxonomic_level.R
inst/CITATION
inst/extdata/example_blast_database.fasta.nto
inst/extdata/example_common_names.csv
inst/extdata/example_blast_database.fasta.nin
inst/extdata/example_blast_database.fasta.ntf
inst/extdata/example_blast_database.fasta.not
inst/extdata/example_blast_database.fasta.ndb
inst/extdata/example_query_sequences.fasta
inst/extdata/example_species_binomials.csv
inst/extdata/example_query_sequences.fastq
inst/extdata/example_blast_database.fasta.nhr
inst/extdata/example_query_sequences.csv
inst/extdata/example_taxonomy.csv
inst/extdata/example_blast_database.fasta.nsq
inst/extdata/example_reference_sequences.fasta
inst/extdata/example_blast_database.fasta
inst/extdata/example_local_taxa_list.csv
man/get_consensus_taxonomy.Rd
man/blast_command_found.Rd
man/isolate_amplicon.Rd
man/blast_version.Rd
man/read.fastq.Rd
man/write.fasta.Rd
man/reverse_complement.Rd
man/merge_pairs.Rd
man/read.fasta.Rd
man/truncate_sequences.length.Rd
man/get_taxonomic_level.Rd
man/decode_quality_scores.Rd
man/local_taxa_tool.Rd
man/trim_sequences.Rd
man/write.fastq.Rd
man/substitute_wildcards.Rd
man/format_reference_database.Rd
man/binomial_test.Rd
man/truncate_sequences.probability.Rd
man/contains_wildcards.Rd
man/truncate_sequences.quality_score.Rd
man/get_taxonomies.IUCN.Rd
man/get_taxonomies.species_binomials.Rd
