read.fastq: Read FASTQ Files

In LocaTT: Geographically-Conscious Taxonomic Assignment for Metabarcoding

Read FASTQ Files

Description

Reads FASTQ files. Does not support the reading of FASTQ files with sequences or quality scores wrapping multiple lines.

Usage

read.fastq(file)

Arguments

file	A string specifying the path to a FASTQ file to read.

Value

A data frame with fields for sequence names, sequences, comments, and quality scores.

See Also

write.fastq for writing FASTQ files.
read.fasta for reading FASTA files.
write.fasta for writing FASTA files.

Examples

# Get path to example FASTQ file.
path_to_fastq_file<-system.file("extdata",
                                "example_query_sequences.fastq",
                                package="LocaTT",
                                mustWork=TRUE)

# Read the example FASTQ file.
read.fastq(file=path_to_fastq_file)

LocaTT documentation built on Nov. 2, 2023, 6:09 p.m.