LorMe-class: LorMe S4 class

In LorMe: Lightweight One-Line Resolving Microbial Ecology Program

LorMe S4 class

Description

A container class for microbial ecology data integration, including metadata, feature tables, configuration parameters, and phylogenetic tree.

Slots

groupfile

data.frame: Sample metadata

data

list: Named list containing feature and taxonomy tables

configuration

list: Analysis configuration parameters

tree

phyloOrNULL: Phylogenetic tree (NULL if not provided, requires ape package)

Methods

show(object)

Print summary of the LorMe object

x$name

Access slots or data elements via $

.DollarNames(x, pattern)

Tab completion for $ access

LorMe documentation built on Jan. 12, 2026, 9:06 a.m.